4 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	atp6v1a	ATPase H+ transporting V1 subunit A. (617 aa)
	LOC103353330	Uncharacterized protein. (623 aa)
	LOC103355037	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. (518 aa)
	LOC103354591	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. (517 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103353330	LOC103354591	ENSSPAP00000003772	ENSSPAP00000012932	Uncharacterized protein.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.805
LOC103353330	LOC103355037	ENSSPAP00000003772	ENSSPAP00000007108	Uncharacterized protein.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.805
LOC103353330	atp6v1a	ENSSPAP00000003772	ENSSPAP00000020356	Uncharacterized protein.	ATPase H+ transporting V1 subunit A.	0.932
LOC103354591	LOC103353330	ENSSPAP00000012932	ENSSPAP00000003772	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.805
LOC103354591	LOC103355037	ENSSPAP00000012932	ENSSPAP00000007108	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.951
LOC103354591	atp6v1a	ENSSPAP00000012932	ENSSPAP00000020356	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATPase H+ transporting V1 subunit A.	0.805
LOC103355037	LOC103353330	ENSSPAP00000007108	ENSSPAP00000003772	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	Uncharacterized protein.	0.805
LOC103355037	LOC103354591	ENSSPAP00000007108	ENSSPAP00000012932	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.951
LOC103355037	atp6v1a	ENSSPAP00000007108	ENSSPAP00000020356	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	ATPase H+ transporting V1 subunit A.	0.805
atp6v1a	LOC103353330	ENSSPAP00000020356	ENSSPAP00000003772	ATPase H+ transporting V1 subunit A.	Uncharacterized protein.	0.932
atp6v1a	LOC103354591	ENSSPAP00000020356	ENSSPAP00000012932	ATPase H+ transporting V1 subunit A.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.805
atp6v1a	LOC103355037	ENSSPAP00000020356	ENSSPAP00000007108	ATPase H+ transporting V1 subunit A.	ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.805