12 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103357827	RAB guanine nucleotide exchange factor (GEF) 1, like. (507 aa)
	ankrd27	Ankyrin repeat domain 27 (VPS9 domain). (1207 aa)
	vps9d1	VPS9 domain containing 1. (569 aa)
	gapvd1	GTPase activating protein and VPS9 domains 1. (1474 aa)
	als2	Alsin Rho guanine nucleotide exchange factor ALS2 b. (1565 aa)
	LOC103367270	VPS9 domain-containing protein. (1015 aa)
	ENSSPAP00000005564	Si:ch211-168d1.3. (726 aa)
	LOC103366651	Uncharacterized protein. (470 aa)
	LOC103372209	Ras and Rab interactor 2. (1110 aa)
	rabgef1	Uncharacterized protein. (512 aa)
	rinl	Uncharacterized protein. (641 aa)
	RIN2	Ras and Rab interactor 2. (962 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000005564	LOC103357827	ENSSPAP00000005564	ENSSPAP00000012078	Si:ch211-168d1.3.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.744
ENSSPAP00000005564	LOC103366651	ENSSPAP00000005564	ENSSPAP00000004437	Si:ch211-168d1.3.	Uncharacterized protein.	0.723
ENSSPAP00000005564	LOC103367270	ENSSPAP00000005564	ENSSPAP00000007592	Si:ch211-168d1.3.	VPS9 domain-containing protein.	0.613
ENSSPAP00000005564	als2	ENSSPAP00000005564	ENSSPAP00000007847	Si:ch211-168d1.3.	Alsin Rho guanine nucleotide exchange factor ALS2 b.	0.647
ENSSPAP00000005564	ankrd27	ENSSPAP00000005564	ENSSPAP00000011474	Si:ch211-168d1.3.	Ankyrin repeat domain 27 (VPS9 domain).	0.446
ENSSPAP00000005564	gapvd1	ENSSPAP00000005564	ENSSPAP00000016599	Si:ch211-168d1.3.	GTPase activating protein and VPS9 domains 1.	0.735
ENSSPAP00000005564	rabgef1	ENSSPAP00000005564	ENSSPAP00000001267	Si:ch211-168d1.3.	Uncharacterized protein.	0.744
LOC103357827	ENSSPAP00000005564	ENSSPAP00000012078	ENSSPAP00000005564	RAB guanine nucleotide exchange factor (GEF) 1, like.	Si:ch211-168d1.3.	0.744
LOC103357827	LOC103366651	ENSSPAP00000012078	ENSSPAP00000004437	RAB guanine nucleotide exchange factor (GEF) 1, like.	Uncharacterized protein.	0.685
LOC103357827	LOC103367270	ENSSPAP00000012078	ENSSPAP00000007592	RAB guanine nucleotide exchange factor (GEF) 1, like.	VPS9 domain-containing protein.	0.723
LOC103357827	LOC103372209	ENSSPAP00000012078	ENSSPAP00000001590	RAB guanine nucleotide exchange factor (GEF) 1, like.	Ras and Rab interactor 2.	0.723
LOC103357827	RIN2	ENSSPAP00000012078	ENSSPAP00000020616	RAB guanine nucleotide exchange factor (GEF) 1, like.	Ras and Rab interactor 2.	0.723
LOC103357827	als2	ENSSPAP00000012078	ENSSPAP00000007847	RAB guanine nucleotide exchange factor (GEF) 1, like.	Alsin Rho guanine nucleotide exchange factor ALS2 b.	0.989
LOC103357827	gapvd1	ENSSPAP00000012078	ENSSPAP00000016599	RAB guanine nucleotide exchange factor (GEF) 1, like.	GTPase activating protein and VPS9 domains 1.	0.685
LOC103357827	rabgef1	ENSSPAP00000012078	ENSSPAP00000001267	RAB guanine nucleotide exchange factor (GEF) 1, like.	Uncharacterized protein.	0.672
LOC103357827	rinl	ENSSPAP00000012078	ENSSPAP00000000247	RAB guanine nucleotide exchange factor (GEF) 1, like.	Uncharacterized protein.	0.723
LOC103366651	ENSSPAP00000005564	ENSSPAP00000004437	ENSSPAP00000005564	Uncharacterized protein.	Si:ch211-168d1.3.	0.723
LOC103366651	LOC103357827	ENSSPAP00000004437	ENSSPAP00000012078	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.685
LOC103366651	LOC103367270	ENSSPAP00000004437	ENSSPAP00000007592	Uncharacterized protein.	VPS9 domain-containing protein.	0.723
LOC103366651	LOC103372209	ENSSPAP00000004437	ENSSPAP00000001590	Uncharacterized protein.	Ras and Rab interactor 2.	0.723