4 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gapvd1	GTPase activating protein and VPS9 domains 1. (1474 aa)
	rabgef1	Uncharacterized protein. (512 aa)
	LOC103366651	Uncharacterized protein. (470 aa)
	LOC103357827	RAB guanine nucleotide exchange factor (GEF) 1, like. (507 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103357827	LOC103366651	ENSSPAP00000012078	ENSSPAP00000004437	RAB guanine nucleotide exchange factor (GEF) 1, like.	Uncharacterized protein.	0.685
LOC103357827	gapvd1	ENSSPAP00000012078	ENSSPAP00000016599	RAB guanine nucleotide exchange factor (GEF) 1, like.	GTPase activating protein and VPS9 domains 1.	0.685
LOC103357827	rabgef1	ENSSPAP00000012078	ENSSPAP00000001267	RAB guanine nucleotide exchange factor (GEF) 1, like.	Uncharacterized protein.	0.672
LOC103366651	LOC103357827	ENSSPAP00000004437	ENSSPAP00000012078	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.685
LOC103366651	rabgef1	ENSSPAP00000004437	ENSSPAP00000001267	Uncharacterized protein.	Uncharacterized protein.	0.683
gapvd1	LOC103357827	ENSSPAP00000016599	ENSSPAP00000012078	GTPase activating protein and VPS9 domains 1.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.685
gapvd1	rabgef1	ENSSPAP00000016599	ENSSPAP00000001267	GTPase activating protein and VPS9 domains 1.	Uncharacterized protein.	0.685
rabgef1	LOC103357827	ENSSPAP00000001267	ENSSPAP00000012078	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.672
rabgef1	LOC103366651	ENSSPAP00000001267	ENSSPAP00000004437	Uncharacterized protein.	Uncharacterized protein.	0.683
rabgef1	gapvd1	ENSSPAP00000001267	ENSSPAP00000016599	Uncharacterized protein.	GTPase activating protein and VPS9 domains 1.	0.685