21 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSPAP00000006047	SH2 domain-containing protein. (195 aa)
	lck	Tyrosine-protein kinase. (500 aa)
	LOC103357838	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (593 aa)
	LOC103372356	Tyrosine-protein kinase. (544 aa)
	LOC103375319	Platelet/endothelial cell adhesion molecule 1. (789 aa)
	YES1	Tyrosine-protein kinase. (552 aa)
	ptpn11	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (602 aa)
	fndc3a	Fibronectin type III domain containing 3A. (1241 aa)
	LOC103366491	Integrin beta; Belongs to the integrin beta chain family. (783 aa)
	ENSSPAP00000021979	Si:dkey-237i9.8. (611 aa)
	inpp5d	Inositol polyphosphate-5-phosphatase D. (1102 aa)
	LOC103353777	Tyrosine-protein kinase. (538 aa)
	ENSSPAP00000026838	Protein kinase domain-containing protein. (75 aa)
	ENSSPAP00000026824	Protein kinase domain-containing protein. (77 aa)
	fndc3b	Fibronectin type III domain containing 3Ba. (1211 aa)
	LOC103361614	Tyrosine-protein kinase. (537 aa)
	LOC103361570	Tyrosine-protein kinase. (547 aa)
	LOC103364929	Integrin beta; Belongs to the integrin beta chain family. (795 aa)
	plcg1	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma; Mediates the production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3). Plays an important role in the regulation of intracellular signaling cascades. (1313 aa)
	lyn	Tyrosine-protein kinase. (511 aa)
	ptpn6	Protein tyrosine phosphatase non-receptor type 6. (570 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000006047	ENSSPAP00000021979	ENSSPAP00000006047	ENSSPAP00000021979	SH2 domain-containing protein.	Si:dkey-237i9.8.	0.567
ENSSPAP00000006047	ENSSPAP00000026838	ENSSPAP00000006047	ENSSPAP00000026838	SH2 domain-containing protein.	Protein kinase domain-containing protein.	0.421
ENSSPAP00000006047	LOC103357838	ENSSPAP00000006047	ENSSPAP00000012523	SH2 domain-containing protein.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.635
ENSSPAP00000006047	LOC103361570	ENSSPAP00000006047	ENSSPAP00000000757	SH2 domain-containing protein.	Tyrosine-protein kinase.	0.900
ENSSPAP00000006047	LOC103361614	ENSSPAP00000006047	ENSSPAP00000002823	SH2 domain-containing protein.	Tyrosine-protein kinase.	0.665
ENSSPAP00000006047	LOC103364929	ENSSPAP00000006047	ENSSPAP00000003970	SH2 domain-containing protein.	Integrin beta; Belongs to the integrin beta chain family.	0.524
ENSSPAP00000006047	LOC103366491	ENSSPAP00000006047	ENSSPAP00000021080	SH2 domain-containing protein.	Integrin beta; Belongs to the integrin beta chain family.	0.524
ENSSPAP00000006047	LOC103372356	ENSSPAP00000006047	ENSSPAP00000014299	SH2 domain-containing protein.	Tyrosine-protein kinase.	0.665
ENSSPAP00000006047	LOC103375319	ENSSPAP00000006047	ENSSPAP00000014867	SH2 domain-containing protein.	Platelet/endothelial cell adhesion molecule 1.	0.567
ENSSPAP00000006047	YES1	ENSSPAP00000006047	ENSSPAP00000015137	SH2 domain-containing protein.	Tyrosine-protein kinase.	0.900
ENSSPAP00000006047	inpp5d	ENSSPAP00000006047	ENSSPAP00000022531	SH2 domain-containing protein.	Inositol polyphosphate-5-phosphatase D.	0.510
ENSSPAP00000006047	lck	ENSSPAP00000006047	ENSSPAP00000012377	SH2 domain-containing protein.	Tyrosine-protein kinase.	0.669
ENSSPAP00000006047	lyn	ENSSPAP00000006047	ENSSPAP00000002956	SH2 domain-containing protein.	Tyrosine-protein kinase.	0.669
ENSSPAP00000006047	plcg1	ENSSPAP00000006047	ENSSPAP00000001144	SH2 domain-containing protein.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma; Mediates the production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3). Plays an important role in the regulation of intracellular signaling cascades.	0.565
ENSSPAP00000006047	ptpn11	ENSSPAP00000006047	ENSSPAP00000015764	SH2 domain-containing protein.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.635
ENSSPAP00000006047	ptpn6	ENSSPAP00000006047	ENSSPAP00000005164	SH2 domain-containing protein.	Protein tyrosine phosphatase non-receptor type 6.	0.635
ENSSPAP00000021979	ENSSPAP00000006047	ENSSPAP00000021979	ENSSPAP00000006047	Si:dkey-237i9.8.	SH2 domain-containing protein.	0.567
ENSSPAP00000021979	ENSSPAP00000026824	ENSSPAP00000021979	ENSSPAP00000026824	Si:dkey-237i9.8.	Protein kinase domain-containing protein.	0.567
ENSSPAP00000021979	ENSSPAP00000026838	ENSSPAP00000021979	ENSSPAP00000026838	Si:dkey-237i9.8.	Protein kinase domain-containing protein.	0.567
ENSSPAP00000021979	LOC103353777	ENSSPAP00000021979	ENSSPAP00000026813	Si:dkey-237i9.8.	Tyrosine-protein kinase.	0.567