57 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	nup98	Nucleoporin 98. (1839 aa)
	LOC103366963	Small ubiquitin-related modifier. (101 aa)
	nup43	Nucleoporin 43. (372 aa)
	ENSSPAP00000021832	RING-type domain-containing protein. (46 aa)
	ube2i	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
	LOC103358040	Si:dkey-219e21.2. (380 aa)
	aaas	Achalasia, adrenocortical insufficiency, alacrimia. (519 aa)
	LOC103364132	Tripartite motif containing 35-13. (469 aa)
	nup88	Nucleoporin 88. (719 aa)
	LOC103368729	Uncharacterized protein. (474 aa)
	nup35	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (298 aa)
	rae1	Ribonucleic acid export 1. (368 aa)
	nup210	Nucleoporin 210. (1857 aa)
	pom121c	POM121 transmembrane nucleoporin. (1184 aa)
	ENSSPAP00000031109	B30.2/SPRY domain-containing protein. (107 aa)
	ENSSPAP00000031112	B30.2/SPRY domain-containing protein. (273 aa)
	ENSSPAP00000031119	Uncharacterized protein. (429 aa)
	ENSSPAP00000031132	B30.2/SPRY domain-containing protein. (198 aa)
	nup188	Nucleoporin 188. (1713 aa)
	nup155	Nucleoporin 155. (1367 aa)
	LOC103363347	Tripartite motif containing 35-28. (463 aa)
	ENSSPAP00000004989	PRY domain-containing protein. (247 aa)
	LOC103375196	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (283 aa)
	ENSSPAP00000004824	Uncharacterized protein. (479 aa)
	nup37	Nucleoporin 37. (323 aa)
	nup58	Nucleoporin 58. (599 aa)
	nup42	Nucleoporin 42. (482 aa)
	nup160	Nucleoporin 160. (1123 aa)
	LOC103367174	Tripartite motif containing 35-12. (501 aa)
	LOC103367159	Uncharacterized protein. (466 aa)
	vhl	Von Hippel-Lindau tumor suppressor. (167 aa)
	tpr	Translocated promoter region b, nuclear basket protein. (2164 aa)
	nup85	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (652 aa)
	mdm2	MDM2 proto-oncogene. (514 aa)
	nup107	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (858 aa)
	pias4	Protein inhibitor of activated STAT, 4a. (507 aa)
	seh1l	SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family. (415 aa)
	nup50	Nucleoporin 50. (447 aa)
	LOC103358548	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
	sec13	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family. (338 aa)
	LOC103375995	Uncharacterized protein. (473 aa)
	LOC103359104	Zgc:194990. (411 aa)
	LOC103361762	Si:dkey-219e21.4. (431 aa)
	LOC103375241	Si:ch211-120g10.1. (398 aa)
	nup133	Nucleoporin 133. (1137 aa)
	ENSSPAP00000011552	B30.2/SPRY domain-containing protein. (411 aa)
	LOC103368523	Uncharacterized protein. (476 aa)
	ranbp2	RAN binding protein 2. (3063 aa)
	ENSSPAP00000009578	Uncharacterized protein. (65 aa)
	nup93	Nucleoporin 93. (671 aa)
	ENSSPAP00000009123	RING-type domain-containing protein. (320 aa)
	LOC103370656	Uncharacterized protein. (549 aa)
	LOC103352892	Uncharacterized protein. (463 aa)
	ndc1	NDC1 transmembrane nucleoporin. (640 aa)
	NUP62	Nucleoporin 62. (573 aa)
	LOC103370131	Translocated promoter region a, nuclear basket protein. (1853 aa)
	LOC103368977	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (794 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000004824	LOC103358548	ENSSPAP00000004824	ENSSPAP00000017820	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.471
ENSSPAP00000004824	LOC103366963	ENSSPAP00000004824	ENSSPAP00000021261	Uncharacterized protein.	Small ubiquitin-related modifier.	0.436
ENSSPAP00000004824	ube2i	ENSSPAP00000004824	ENSSPAP00000021849	Uncharacterized protein.	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.	0.471
ENSSPAP00000004989	LOC103358548	ENSSPAP00000004989	ENSSPAP00000017820	PRY domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.471
ENSSPAP00000004989	LOC103366963	ENSSPAP00000004989	ENSSPAP00000021261	PRY domain-containing protein.	Small ubiquitin-related modifier.	0.436
ENSSPAP00000004989	ube2i	ENSSPAP00000004989	ENSSPAP00000021849	PRY domain-containing protein.	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.	0.471
ENSSPAP00000009123	LOC103358548	ENSSPAP00000009123	ENSSPAP00000017820	RING-type domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.471
ENSSPAP00000009123	LOC103366963	ENSSPAP00000009123	ENSSPAP00000021261	RING-type domain-containing protein.	Small ubiquitin-related modifier.	0.436
ENSSPAP00000009123	ube2i	ENSSPAP00000009123	ENSSPAP00000021849	RING-type domain-containing protein.	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.	0.471
ENSSPAP00000009578	LOC103358548	ENSSPAP00000009578	ENSSPAP00000017820	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.471
ENSSPAP00000009578	LOC103366963	ENSSPAP00000009578	ENSSPAP00000021261	Uncharacterized protein.	Small ubiquitin-related modifier.	0.436
ENSSPAP00000009578	ube2i	ENSSPAP00000009578	ENSSPAP00000021849	Uncharacterized protein.	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.	0.471
ENSSPAP00000011552	LOC103358548	ENSSPAP00000011552	ENSSPAP00000017820	B30.2/SPRY domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.471
ENSSPAP00000011552	LOC103366963	ENSSPAP00000011552	ENSSPAP00000021261	B30.2/SPRY domain-containing protein.	Small ubiquitin-related modifier.	0.436
ENSSPAP00000011552	ube2i	ENSSPAP00000011552	ENSSPAP00000021849	B30.2/SPRY domain-containing protein.	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.	0.471
ENSSPAP00000021832	LOC103358548	ENSSPAP00000021832	ENSSPAP00000017820	RING-type domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.471
ENSSPAP00000021832	LOC103366963	ENSSPAP00000021832	ENSSPAP00000021261	RING-type domain-containing protein.	Small ubiquitin-related modifier.	0.436
ENSSPAP00000021832	ube2i	ENSSPAP00000021832	ENSSPAP00000021849	RING-type domain-containing protein.	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family.	0.471
ENSSPAP00000031109	LOC103358548	ENSSPAP00000031109	ENSSPAP00000017820	B30.2/SPRY domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.471
ENSSPAP00000031109	LOC103366963	ENSSPAP00000031109	ENSSPAP00000021261	B30.2/SPRY domain-containing protein.	Small ubiquitin-related modifier.	0.436