44 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pom121c	POM121 transmembrane nucleoporin. (1184 aa)
	LOC103360410	Uncharacterized protein. (591 aa)
	topors	Topoisomerase I binding, arginine/serine-rich a. (813 aa)
	nup160	Nucleoporin 160. (1123 aa)
	nup42	Nucleoporin 42. (482 aa)
	nup58	Nucleoporin 58. (599 aa)
	nup37	Nucleoporin 37. (323 aa)
	LOC103375196	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (283 aa)
	nup155	Nucleoporin 155. (1367 aa)
	nup188	Nucleoporin 188. (1713 aa)
	LOC103368977	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (794 aa)
	LOC103370131	Translocated promoter region a, nuclear basket protein. (1853 aa)
	NUP62	Nucleoporin 62. (573 aa)
	ndc1	NDC1 transmembrane nucleoporin. (640 aa)
	nup93	Nucleoporin 93. (671 aa)
	ranbp2	RAN binding protein 2. (3063 aa)
	LOC103371831	Potassium channel tetramerization domain containing 2. (277 aa)
	LOC103370190	Ubiquitin-like domain-containing protein. (112 aa)
	LOC103362300	Uncharacterized protein. (647 aa)
	ENSSPAP00000014085	Uncharacterized protein. (456 aa)
	LOC103373032	Uncharacterized protein. (612 aa)
	nup133	Nucleoporin 133. (1137 aa)
	sec13	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family. (338 aa)
	LOC103358548	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
	nup50	Nucleoporin 50. (447 aa)
	ranbp3	RAN binding protein 3b. (518 aa)
	seh1l	SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family. (415 aa)
	nup98	Nucleoporin 98. (1839 aa)
	nup107	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (858 aa)
	nup85	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (652 aa)
	sumo2	Rad60-SLD domain-containing protein. (71 aa)
	tpr	Translocated promoter region b, nuclear basket protein. (2164 aa)
	pias4	Protein inhibitor of activated STAT, 4a. (507 aa)
	LOC103366963	Small ubiquitin-related modifier. (101 aa)
	nup43	Nucleoporin 43. (372 aa)
	ube2i	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
	aaas	Achalasia, adrenocortical insufficiency, alacrimia. (519 aa)
	LOC103365249	RING-type domain-containing protein. (1123 aa)
	nup88	Nucleoporin 88. (719 aa)
	nup35	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (298 aa)
	LOC103353782	Ubiquitin-like domain-containing protein. (131 aa)
	rae1	Ribonucleic acid export 1. (368 aa)
	LOC103354886	Small ubiquitin-related modifier. (96 aa)
	nup210	Nucleoporin 210. (1857 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000014085	NUP62	ENSSPAP00000014085	ENSSPAP00000008713	Uncharacterized protein.	Nucleoporin 62.	0.448
ENSSPAP00000014085	ndc1	ENSSPAP00000014085	ENSSPAP00000008811	Uncharacterized protein.	NDC1 transmembrane nucleoporin.	0.422
ENSSPAP00000014085	nup107	ENSSPAP00000014085	ENSSPAP00000019097	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.412
ENSSPAP00000014085	nup133	ENSSPAP00000014085	ENSSPAP00000014180	Uncharacterized protein.	Nucleoporin 133.	0.434
ENSSPAP00000014085	nup155	ENSSPAP00000014085	ENSSPAP00000006429	Uncharacterized protein.	Nucleoporin 155.	0.411
ENSSPAP00000014085	nup210	ENSSPAP00000014085	ENSSPAP00000028643	Uncharacterized protein.	Nucleoporin 210.	0.453
ENSSPAP00000014085	nup50	ENSSPAP00000014085	ENSSPAP00000018779	Uncharacterized protein.	Nucleoporin 50.	0.510
ENSSPAP00000014085	nup58	ENSSPAP00000014085	ENSSPAP00000004641	Uncharacterized protein.	Nucleoporin 58.	0.448
ENSSPAP00000014085	rae1	ENSSPAP00000014085	ENSSPAP00000027814	Uncharacterized protein.	Ribonucleic acid export 1.	0.598
ENSSPAP00000014085	ranbp2	ENSSPAP00000014085	ENSSPAP00000010511	Uncharacterized protein.	RAN binding protein 2.	0.417
LOC103353782	LOC103358548	ENSSPAP00000027383	ENSSPAP00000017820	Ubiquitin-like domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.977
LOC103353782	LOC103365249	ENSSPAP00000027383	ENSSPAP00000023529	Ubiquitin-like domain-containing protein.	RING-type domain-containing protein.	0.673
LOC103353782	LOC103366963	ENSSPAP00000027383	ENSSPAP00000021261	Ubiquitin-like domain-containing protein.	Small ubiquitin-related modifier.	0.890
LOC103353782	LOC103368977	ENSSPAP00000027383	ENSSPAP00000007535	Ubiquitin-like domain-containing protein.	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.	0.667
LOC103353782	LOC103370131	ENSSPAP00000027383	ENSSPAP00000008697	Ubiquitin-like domain-containing protein.	Translocated promoter region a, nuclear basket protein.	0.672
LOC103353782	LOC103371831	ENSSPAP00000027383	ENSSPAP00000010517	Ubiquitin-like domain-containing protein.	Potassium channel tetramerization domain containing 2.	0.885
LOC103353782	LOC103375196	ENSSPAP00000027383	ENSSPAP00000004942	Ubiquitin-like domain-containing protein.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.496
LOC103353782	NUP62	ENSSPAP00000027383	ENSSPAP00000008713	Ubiquitin-like domain-containing protein.	Nucleoporin 62.	0.615
LOC103353782	ndc1	ENSSPAP00000027383	ENSSPAP00000008811	Ubiquitin-like domain-containing protein.	NDC1 transmembrane nucleoporin.	0.516
LOC103353782	nup107	ENSSPAP00000027383	ENSSPAP00000019097	Ubiquitin-like domain-containing protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.700