STRINGSTRING
LOC103360126 LOC103360126 LOC103364803 LOC103364803 eif4b eif4b ENSSPAP00000004195 ENSSPAP00000004195 patl1 patl1 dcps dcps exosc8 exosc8 LOC103363318 LOC103363318 cnot3 cnot3 exosc9 exosc9 exosc7 exosc7 mtpap mtpap patl2 patl2 cnot11 cnot11 arsk arsk lsm5 lsm5 exosc3 exosc3 LOC103355613 LOC103355613 dcp1a dcp1a ENSSPAP00000008883 ENSSPAP00000008883 cnot2 cnot2 LOC103366231 LOC103366231 cnot8 cnot8 ENSSPAP00000010665 ENSSPAP00000010665 ENSSPAP00000010685 ENSSPAP00000010685 ENSSPAP00000010739 ENSSPAP00000010739 ENSSPAP00000011494 ENSSPAP00000011494 LOC103357815 LOC103357815 LOC103354029 LOC103354029 pabpc4 pabpc4 toe1 toe1 paip1 paip1 LOC103375937 LOC103375937 lsm4 lsm4 LOC103366853 LOC103366853 ENSSPAP00000016002 ENSSPAP00000016002 hbs1l hbs1l cnot4 cnot4 skiv2l skiv2l LOC103366440 LOC103366440 tut1 tut1 ddx6 ddx6 exosc2 exosc2 cnot6l cnot6l tent2 tent2 lrrc27 lrrc27 LOC103374427 LOC103374427 dis3l2 dis3l2 lsm1 lsm1 edc3 edc3 pan2 pan2 dis3 dis3 dis3l dis3l LOC103371419 LOC103371419 CNOT7 CNOT7 cnot1 cnot1 ENSSPAP00000024373 ENSSPAP00000024373 ENSSPAP00000024293 ENSSPAP00000024293 ENSSPAP00000024273 ENSSPAP00000024273 exosc5 exosc5 LOC103373754 LOC103373754 eif4a3 eif4a3 lsm2 lsm2 exosc1 exosc1 edc4 edc4 exosc4 exosc4 CNOT9 CNOT9 lsm7 lsm7 ENSSPAP00000019704 ENSSPAP00000019704 pan3 pan3 cnot10 cnot10 cnot6 cnot6 lsm3 lsm3 wdr61 wdr61 exosc6 exosc6 ENSSPAP00000001830 ENSSPAP00000001830 LOC103366045 LOC103366045 LOC103373921 LOC103373921 LOC103365478 LOC103365478 eif4a2 eif4a2
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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LOC103360126Uncharacterized protein; Belongs to the DEAD box helicase family. (489 aa)
LOC103364803Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (635 aa)
eif4bEukaryotic translation initiation factor 4Bb. (647 aa)
ENSSPAP00000004195LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (80 aa)
patl1PAT1 homolog 1, processing body mRNA decay factor. (752 aa)
dcpsDecapping enzyme, scavenger. (330 aa)
exosc8Exosome component 8. (277 aa)
LOC103363318CCR4-NOT transcription complex subunit 9. (297 aa)
cnot3CCR4-NOT transcription complex, subunit 3a. (891 aa)
exosc9Exosome component 9. (420 aa)
exosc7Exosome component 7. (291 aa)
mtpapMitochondrial poly(A) polymerase. (576 aa)
patl2PAT1 homolog 2. (625 aa)
cnot11CCR4-NOT transcription complex, subunit 11. (445 aa)
arskTetratricopeptide repeat domain 37. (1582 aa)
lsm5LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated. (59 aa)
exosc3Exosome component 3. (244 aa)
LOC103355613Eukaryotic translation initiation factor 4ea; Belongs to the eukaryotic initiation factor 4E family. (216 aa)
dcp1aDecapping mRNA 1A. (506 aa)
ENSSPAP00000008883Uncharacterized protein. (58 aa)
cnot2CCR4-NOT transcription complex, subunit 2. (451 aa)
LOC103366231Poly(A)-specific ribonuclease (deadenylation nuclease). (682 aa)
cnot8CCR4-NOT transcription complex, subunit 8. (285 aa)
ENSSPAP00000010665Uncharacterized protein. (146 aa)
ENSSPAP00000010685Uncharacterized protein. (143 aa)
ENSSPAP00000010739Uncharacterized protein. (641 aa)
ENSSPAP00000011494Uncharacterized protein. (117 aa)
LOC103357815Zgc:153119. (306 aa)
LOC103354029Eukaryotic translation initiation factor 4eb; Belongs to the eukaryotic initiation factor 4E family. (241 aa)
pabpc4Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (627 aa)
toe1Target of EGR1, exonuclease. (526 aa)
paip1Poly(A) binding protein interacting protein 1. (450 aa)
LOC103375937Enhancer of mRNA decapping 3 homolog (S. cerevisiae). (478 aa)
lsm4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (151 aa)
LOC103366853CCR4-NOT transcription complex, subunit 7. (248 aa)
ENSSPAP00000016002Tr-type G domain-containing protein. (72 aa)
hbs1lHBS1_N domain-containing protein. (155 aa)
cnot4CCR4-NOT transcription complex, subunit 4a. (798 aa)
skiv2lSKI2 homolog, superkiller viralicidic activity 2-like. (1188 aa)
LOC103366440NOT2_3_5 domain-containing protein. (536 aa)
tut1Terminal uridylyl transferase 1, U6 snRNA-specific. (800 aa)
ddx6DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family. (482 aa)
exosc2Exosome component 2. (293 aa)
cnot6lCCR4-NOT transcription complex, subunit 6-like. (553 aa)
tent2Terminal nucleotidyltransferase 2. (485 aa)
lrrc27Uncharacterized protein. (428 aa)
LOC103374427Eukaryotic translation initiation factor 4E family member 1c; Belongs to the eukaryotic initiation factor 4E family. (238 aa)
dis3l2DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily. (1052 aa)
lsm1U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (133 aa)
edc3Enhancer of mRNA decapping 3. (474 aa)
pan2PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent [...] (1210 aa)
dis3DIS3 exosome endoribonuclease and 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family. (951 aa)
dis3lDIS3 like exosome 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family. (1043 aa)
LOC103371419Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (633 aa)
CNOT7CCR4-NOT transcription complex subunit 7. (249 aa)
cnot1CCR4-NOT transcription complex, subunit 1. (2333 aa)
ENSSPAP00000024373Uncharacterized protein. (701 aa)
ENSSPAP00000024293Uncharacterized protein. (148 aa)
ENSSPAP00000024273C2H2-type domain-containing protein. (151 aa)
exosc5Exosome component 5. (220 aa)
LOC103373754Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (557 aa)
eif4a3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (410 aa)
lsm2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
exosc1Exosome component 1. (213 aa)
edc4Enhancer of mRNA decapping 4. (1390 aa)
exosc4Exosome component 4. (264 aa)
CNOT9CCR4-NOT transcription complex subunit 9. (299 aa)
lsm7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (167 aa)
ENSSPAP00000019704Decapping mRNA 2. (248 aa)
pan3PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...] (793 aa)
cnot10CCR4-NOT transcription complex, subunit 10. (755 aa)
cnot6CCR4-NOT transcription complex, subunit 6a. (559 aa)
lsm3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
wdr61WD repeat domain 61. (305 aa)
exosc6Exosome component 6. (274 aa)
ENSSPAP00000001830Pyrin domain-containing protein. (99 aa)
LOC103366045CCR4-NOT transcription complex, subunit 3b. (929 aa)
LOC103373921DEAD (Asp-Glu-Ala-Asp) box helicase 61; Belongs to the DEAD box helicase family. (484 aa)
LOC103365478Eukaryotic translation initiation factor 4A1B; Belongs to the DEAD box helicase family. (404 aa)
eif4a2Eukaryotic translation initiation factor 4A, isoform 2; Belongs to the DEAD box helicase family. (411 aa)
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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