26 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	fgr	Tyrosine-protein kinase. (533 aa)
	LOC103361019	Protein phosphatase 2, regulatory subunit A, beta b. (589 aa)
	ptpn6	Protein tyrosine phosphatase non-receptor type 6. (570 aa)
	LOC103355569	Low density lipoprotein receptor-related protein 8, apolipoprotein e receptor. (969 aa)
	LOC103368176	Mitogen-activated protein kinase. (360 aa)
	ppp2r5d	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (566 aa)
	ppp2r5e	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (529 aa)
	LOC103357838	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (593 aa)
	LOC103367857	Zgc:171775. (342 aa)
	LOC103375319	Platelet/endothelial cell adhesion molecule 1. (789 aa)
	ptpn11	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (602 aa)
	LOC103370234	Mitogen-activated protein kinase. (361 aa)
	ppp2r5a	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (513 aa)
	LOC103359220	Serine/threonine-protein phosphatase. (309 aa)
	LOC103373662	Serine/threonine-protein phosphatase. (309 aa)
	pla2g4a	Phospholipase A2. (749 aa)
	ENSSPAP00000021979	Si:dkey-237i9.8. (611 aa)
	ppp2r5b	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (512 aa)
	ppp2ca	Serine/threonine-protein phosphatase. (309 aa)
	LOC103369946	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (577 aa)
	ppp2r5c	Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (486 aa)
	ENSSPAP00000030443	Vitellogenin domain-containing protein. (2395 aa)
	ENSSPAP00000030517	Vitellogenin domain-containing protein. (2328 aa)
	ENSSPAP00000030537	Vitellogenin domain-containing protein. (772 aa)
	ENSSPAP00000030547	Uncharacterized protein. (414 aa)
	LOC103371606	Apolipoprotein Ba. (4357 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000021979	LOC103357838	ENSSPAP00000021979	ENSSPAP00000012523	Si:dkey-237i9.8.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.857
ENSSPAP00000021979	LOC103359220	ENSSPAP00000021979	ENSSPAP00000018796	Si:dkey-237i9.8.	Serine/threonine-protein phosphatase.	0.479
ENSSPAP00000021979	LOC103361019	ENSSPAP00000021979	ENSSPAP00000003397	Si:dkey-237i9.8.	Protein phosphatase 2, regulatory subunit A, beta b.	0.666
ENSSPAP00000021979	LOC103373662	ENSSPAP00000021979	ENSSPAP00000019670	Si:dkey-237i9.8.	Serine/threonine-protein phosphatase.	0.479
ENSSPAP00000021979	fgr	ENSSPAP00000021979	ENSSPAP00000021915	Si:dkey-237i9.8.	Tyrosine-protein kinase.	0.599
ENSSPAP00000021979	ppp2ca	ENSSPAP00000021979	ENSSPAP00000027044	Si:dkey-237i9.8.	Serine/threonine-protein phosphatase.	0.479
ENSSPAP00000021979	ptpn11	ENSSPAP00000021979	ENSSPAP00000015764	Si:dkey-237i9.8.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.857
ENSSPAP00000021979	ptpn6	ENSSPAP00000021979	ENSSPAP00000005164	Si:dkey-237i9.8.	Protein tyrosine phosphatase non-receptor type 6.	0.858
ENSSPAP00000030443	ENSSPAP00000030547	ENSSPAP00000030443	ENSSPAP00000030547	Vitellogenin domain-containing protein.	Uncharacterized protein.	0.464
ENSSPAP00000030443	LOC103355569	ENSSPAP00000030443	ENSSPAP00000006620	Vitellogenin domain-containing protein.	Low density lipoprotein receptor-related protein 8, apolipoprotein e receptor.	0.605
ENSSPAP00000030443	LOC103357838	ENSSPAP00000030443	ENSSPAP00000012523	Vitellogenin domain-containing protein.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.504
ENSSPAP00000030443	pla2g4a	ENSSPAP00000030443	ENSSPAP00000020508	Vitellogenin domain-containing protein.	Phospholipase A2.	0.405
ENSSPAP00000030443	ptpn11	ENSSPAP00000030443	ENSSPAP00000015764	Vitellogenin domain-containing protein.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.504
ENSSPAP00000030443	ptpn6	ENSSPAP00000030443	ENSSPAP00000005164	Vitellogenin domain-containing protein.	Protein tyrosine phosphatase non-receptor type 6.	0.504
ENSSPAP00000030517	LOC103355569	ENSSPAP00000030517	ENSSPAP00000006620	Vitellogenin domain-containing protein.	Low density lipoprotein receptor-related protein 8, apolipoprotein e receptor.	0.605
ENSSPAP00000030517	LOC103357838	ENSSPAP00000030517	ENSSPAP00000012523	Vitellogenin domain-containing protein.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.504
ENSSPAP00000030517	pla2g4a	ENSSPAP00000030517	ENSSPAP00000020508	Vitellogenin domain-containing protein.	Phospholipase A2.	0.405
ENSSPAP00000030517	ptpn11	ENSSPAP00000030517	ENSSPAP00000015764	Vitellogenin domain-containing protein.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.504
ENSSPAP00000030517	ptpn6	ENSSPAP00000030517	ENSSPAP00000005164	Vitellogenin domain-containing protein.	Protein tyrosine phosphatase non-receptor type 6.	0.504
ENSSPAP00000030537	ENSSPAP00000030547	ENSSPAP00000030537	ENSSPAP00000030547	Vitellogenin domain-containing protein.	Uncharacterized protein.	0.837