63 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sumo2	Rad60-SLD domain-containing protein. (71 aa)
	pias1	Protein inhibitor of activated STAT, 1a. (698 aa)
	LOC103354944	WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family. (543 aa)
	ccnh	Cyclin H; Belongs to the cyclin family. (319 aa)
	ENSSPAP00000001828	Si:dkey-117m1.4. (678 aa)
	ercc2	Excision repair cross-complementation group 2. (760 aa)
	UBB	Ubiquitin B. (258 aa)
	rad23b	RAD23 homolog B, nucleotide excision repair protein. (388 aa)
	gtf2h3	General transcription factor IIH, polypeptide 3. (300 aa)
	gtf2h5	General transcription factor IIH, polypeptide 5. (71 aa)
	ercc3	Excision repair cross-complementation group 3. (783 aa)
	cul4a	Cullin 4A; Belongs to the cullin family. (766 aa)
	gtf2h4	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (463 aa)
	cetn3	Centrin 3. (167 aa)
	parp1	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1001 aa)
	ENSSPAP00000025164	Rad60-SLD domain-containing protein. (149 aa)
	ENSSPAP00000024898	Uncharacterized protein. (245 aa)
	rbx1	Ring-box 1, E3 ubiquitin protein ligase. (146 aa)
	chd1l	Chromodomain helicase DNA binding protein 1-like. (949 aa)
	ube2i	Ubiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
	ercc5	Excision repair cross-complementation group 5. (1139 aa)
	LOC103366963	Small ubiquitin-related modifier. (101 aa)
	ENSSPAP00000020655	Ubiquitin-conjugating enzyme E2 variant 2. (145 aa)
	vwa5b2	Von Willebrand factor A domain containing 5B2. (1017 aa)
	xpa	Xeroderma pigmentosum, complementation group A. (273 aa)
	ercc4	Excision repair cross-complementation group 4. (899 aa)
	ube2v1	Ubiquitin-conjugating enzyme E2 variant 1. (149 aa)
	LOC103374290	WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family. (473 aa)
	LOC103358548	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
	mnat1	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (311 aa)
	bivm	Basic, immunoglobulin-like variable motif containing. (500 aa)
	rpa2	Replication protein A2. (293 aa)
	parp2	Poly [ADP-ribose] polymerase. (650 aa)
	LOC103369122	Ubiquitin-like domain-containing protein. (164 aa)
	meiob	Methionine sulfoxide reductase B1b. (430 aa)
	ddb2	Damage-specific DNA-binding protein 2. (496 aa)
	rpa3	Replication protein A3. (122 aa)
	LOC103364049	Centrin 4. (171 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	RPA1	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (597 aa)
	LOC103354071	Uncharacterized protein. (474 aa)
	xpc	Xeroderma pigmentosum, complementation group C. (864 aa)
	ube2n	Ubiquitin-conjugating enzyme E2Na; Belongs to the ubiquitin-conjugating enzyme family. (149 aa)
	ddb1	Damage-specific DNA binding protein 1. (1085 aa)
	rpa1	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (600 aa)
	cul4b	Cullin 4B; Belongs to the cullin family. (857 aa)
	LOC103370190	Ubiquitin-like domain-containing protein. (112 aa)
	rnf111	Ring finger protein 111. (1027 aa)
	LOC103371831	Potassium channel tetramerization domain containing 2. (277 aa)
	parp3	Poly [ADP-ribose] polymerase. (529 aa)
	rad23a	RAD23 homolog A, nucleotide excision repair protein a. (376 aa)
	LOC103372741	Protein inhibitor of activated STAT, 1b. (544 aa)
	LOC103371583	General transcription factor IIH subunit. (390 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	cdk7	Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (343 aa)
	ercc1	Excision repair cross-complementation group 1. (361 aa)
	kxd1	KxDL motif containing 1. (184 aa)
	LOC103354886	Small ubiquitin-related modifier. (96 aa)
	gtf2h1	General transcription factor IIH, polypeptide 1. (550 aa)
	DDB2	DNA damage-binding protein 2-like. (496 aa)
	LOC103353782	Ubiquitin-like domain-containing protein. (131 aa)
	usp45	Ubiquitin carboxyl-terminal hydrolase. (810 aa)
	LOC103358109	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (152 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDB2	ENSSPAP00000001828	ENSSPAP00000027405	ENSSPAP00000001828	DNA damage-binding protein 2-like.	Si:dkey-117m1.4.	0.577
DDB2	ENSSPAP00000020655	ENSSPAP00000027405	ENSSPAP00000020655	DNA damage-binding protein 2-like.	Ubiquitin-conjugating enzyme E2 variant 2.	0.617
DDB2	ENSSPAP00000024898	ENSSPAP00000027405	ENSSPAP00000024898	DNA damage-binding protein 2-like.	Uncharacterized protein.	0.724
DDB2	ENSSPAP00000025164	ENSSPAP00000027405	ENSSPAP00000025164	DNA damage-binding protein 2-like.	Rad60-SLD domain-containing protein.	0.455
DDB2	LOC103353782	ENSSPAP00000027405	ENSSPAP00000027383	DNA damage-binding protein 2-like.	Ubiquitin-like domain-containing protein.	0.610
DDB2	LOC103354071	ENSSPAP00000027405	ENSSPAP00000014388	DNA damage-binding protein 2-like.	Uncharacterized protein.	0.741
DDB2	LOC103354886	ENSSPAP00000027405	ENSSPAP00000028486	DNA damage-binding protein 2-like.	Small ubiquitin-related modifier.	0.610
DDB2	LOC103358109	ENSSPAP00000027405	ENSSPAP00000026168	DNA damage-binding protein 2-like.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.635
DDB2	LOC103358548	ENSSPAP00000027405	ENSSPAP00000017820	DNA damage-binding protein 2-like.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.586
DDB2	LOC103364049	ENSSPAP00000027405	ENSSPAP00000015036	DNA damage-binding protein 2-like.	Centrin 4.	0.772
DDB2	LOC103366963	ENSSPAP00000027405	ENSSPAP00000021261	DNA damage-binding protein 2-like.	Small ubiquitin-related modifier.	0.659
DDB2	LOC103369122	ENSSPAP00000027405	ENSSPAP00000016103	DNA damage-binding protein 2-like.	Ubiquitin-like domain-containing protein.	0.594
DDB2	LOC103370190	ENSSPAP00000027405	ENSSPAP00000012745	DNA damage-binding protein 2-like.	Ubiquitin-like domain-containing protein.	0.610
DDB2	LOC103371583	ENSSPAP00000027405	ENSSPAP00000030702	DNA damage-binding protein 2-like.	General transcription factor IIH subunit.	0.644
DDB2	LOC103371831	ENSSPAP00000027405	ENSSPAP00000010517	DNA damage-binding protein 2-like.	Potassium channel tetramerization domain containing 2.	0.531
DDB2	RPA1	ENSSPAP00000027405	ENSSPAP00000014932	DNA damage-binding protein 2-like.	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	0.798
DDB2	UBB	ENSSPAP00000027405	ENSSPAP00000003565	DNA damage-binding protein 2-like.	Ubiquitin B.	0.720
DDB2	bivm	ENSSPAP00000027405	ENSSPAP00000016937	DNA damage-binding protein 2-like.	Basic, immunoglobulin-like variable motif containing.	0.728
DDB2	ccnh	ENSSPAP00000027405	ENSSPAP00000001387	DNA damage-binding protein 2-like.	Cyclin H; Belongs to the cyclin family.	0.690
DDB2	cdk7	ENSSPAP00000027405	ENSSPAP00000029052	DNA damage-binding protein 2-like.	Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily.	0.573