STRINGSTRING
bivm bivm RCBTB1 RCBTB1 prpf19 prpf19 cops3 cops3 ino80d ino80d LOC103360719 LOC103360719 rnf111 rnf111 LOC103371831 LOC103371831 ino80 ino80 phf3 phf3 parp3 parp3 pold4 pold4 rad23a rad23a actr8 actr8 rpa3 rpa3 lig3 lig3 gtf2h4 gtf2h4 polr2c polr2c cul4a cul4a POLR2B POLR2B ercc3 ercc3 ino80b ino80b rfc2 rfc2 tfpt tfpt gtf2h5 gtf2h5 gtf2h3 gtf2h3 rad23b rad23b COPS6 COPS6 actr5 actr5 UBB UBB LOC103372802 LOC103372802 ino80c ino80c ercc2 ercc2 xab2 xab2 ENSSPAP00000001828 ENSSPAP00000001828 pcna pcna ruvbl1 ruvbl1 ENSSPAP00000001574 ENSSPAP00000001574 ccnh ccnh YY1 YY1 nrde2 nrde2 ENSSPAP00000000829 ENSSPAP00000000829 RFC4 RFC4 LOC103354944 LOC103354944 LOC103355474 LOC103355474 mcrs1 mcrs1 tcea3 tcea3 mnat1 mnat1 usp7 usp7 LOC103358882 LOC103358882 polr2d polr2d LOC103358548 LOC103358548 rcbtb2 rcbtb2 LOC103374290 LOC103374290 ube2v1 ube2v1 rpap3 rpap3 sumo2 sumo2 ercc4 ercc4 xpa xpa polr2g polr2g actb actb vwa5b2 vwa5b2 ENSSPAP00000020655 ENSSPAP00000020655 polr2i polr2i aqr aqr pole3 pole3 rfc5 rfc5 LOC103366963 LOC103366963 ercc5 ercc5 LOC103371563 LOC103371563 LOC103371583 LOC103371583 LOC103372741 LOC103372741 nfrkb nfrkb uvssa uvssa lig1 lig1 ube2i ube2i tcea1 tcea1 ZNF830 ZNF830 LOC103365223 LOC103365223 pole4 pole4 polr2a polr2a ino80e ino80e ep300 ep300 POLR2E POLR2E chd1l chd1l rbx1 rbx1 cops7a cops7a pole2 pole2 LOC103365252 LOC103365252 ENSSPAP00000024898 ENSSPAP00000024898 ENSSPAP00000025164 ENSSPAP00000025164 parp1 parp1 pole pole LOC103373818 LOC103373818 cetn3 cetn3 ENSSPAP00000025562 ENSSPAP00000025562 pias1 pias1 polr2k polr2k polr2f polr2f LOC103358109 LOC103358109 cops2 cops2 usp45 usp45 usp40 usp40 cops8 cops8 tceanc2 tceanc2 LOC103353782 LOC103353782 DDB2 DDB2 rfc1 rfc1 gtf2h1 gtf2h1 RCBTB1-2 RCBTB1-2 ENSSPAP00000028127 ENSSPAP00000028127 cops5 cops5 polk polk cops4 cops4 LOC103354886 LOC103354886 kxd1 kxd1 ercc1 ercc1 cdk7 cdk7 ENSSPAP00000029109 ENSSPAP00000029109 ercc8 ercc8 polr2j polr2j LOC103364319 LOC103364319 rps27a rps27a LOC103370190 LOC103370190 pold1 pold1 LOC103361719 LOC103361719 LOC103356759 LOC103356759 cul4b cul4b rpa1 rpa1 ddb1 ddb1 LOC103359556 LOC103359556 ube2n ube2n xpc xpc LOC103367858 LOC103367858 atad5 atad5 LOC103354071 LOC103354071 LOC103365100 LOC103365100 TCEANC TCEANC RPA1 RPA1 uba52 uba52 LOC103364049 LOC103364049 gps1 gps1 ddb2 ddb2 LOC103357898 LOC103357898 rfc3 rfc3 meiob meiob LOC103369122 LOC103369122 polr2h polr2h xrcc1 xrcc1 parp2 parp2 pold2 pold2 rpa2 rpa2 ppie ppie
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
bivmBasic, immunoglobulin-like variable motif containing. (500 aa)
RCBTB1RCC1 and BTB domain containing protein 1. (484 aa)
prpf19Pre-mRNA processing factor 19. (505 aa)
cops3COP9 signalosome subunit 3. (423 aa)
ino80dINO80 complex subunit Da. (1000 aa)
LOC103360719ATPase family AAA domain containing 5a. (1480 aa)
rnf111Ring finger protein 111. (1027 aa)
LOC103371831Potassium channel tetramerization domain containing 2. (277 aa)
ino80INO80 complex ATPase subunit. (1467 aa)
phf3PHD finger protein 3. (1682 aa)
parp3Poly [ADP-ribose] polymerase. (529 aa)
pold4Si:dkey-28b4.7. (108 aa)
rad23aRAD23 homolog A, nucleotide excision repair protein a. (376 aa)
actr8Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily. (644 aa)
rpa3Replication protein A3. (122 aa)
lig3DNA ligase. (1014 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (463 aa)
polr2cPolymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
cul4aCullin 4A; Belongs to the cullin family. (766 aa)
POLR2BDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
ercc3Excision repair cross-complementation group 3. (783 aa)
ino80bINO80 complex subunit B. (320 aa)
rfc2Replication factor C (activator 1) 2. (352 aa)
tfptTCF3 (E2A) fusion partner. (199 aa)
gtf2h5General transcription factor IIH, polypeptide 5. (71 aa)
gtf2h3General transcription factor IIH, polypeptide 3. (300 aa)
rad23bRAD23 homolog B, nucleotide excision repair protein. (388 aa)
COPS6COP9 signalosome subunit 6. (316 aa)
actr5Actin related protein 5; Belongs to the actin family. (610 aa)
UBBUbiquitin B. (258 aa)
LOC103372802Uncharacterized protein. (445 aa)
ino80cINO80 complex subunit C. (198 aa)
ercc2Excision repair cross-complementation group 2. (760 aa)
xab2XPA binding protein 2. (850 aa)
ENSSPAP00000001828Si:dkey-117m1.4. (678 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
ruvbl1RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (456 aa)
ENSSPAP00000001574Uncharacterized protein. (87 aa)
ccnhCyclin H; Belongs to the cyclin family. (319 aa)
YY1YY1 transcription factor b. (364 aa)
nrde2NRDE-2, necessary for RNA interference, domain containing. (1055 aa)
ENSSPAP00000000829Uncharacterized protein. (480 aa)
RFC4Replication factor C subunit 4. (326 aa)
LOC103354944WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family. (543 aa)
LOC103355474Replication factor C (activator 1) 4. (330 aa)
mcrs1Microspherule protein 1. (467 aa)
tcea3Transcription elongation factor A (SII), 3. (749 aa)
mnat1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (311 aa)
usp7Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family. (1112 aa)
LOC103358882YY1 transcription factor. (350 aa)
polr2dPolymerase (RNA) II (DNA directed) polypeptide D. (144 aa)
LOC103358548UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
rcbtb2Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (527 aa)
LOC103374290WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family. (473 aa)
ube2v1Ubiquitin-conjugating enzyme E2 variant 1. (149 aa)
rpap3RNA polymerase II associated protein 3. (641 aa)
sumo2Rad60-SLD domain-containing protein. (71 aa)
ercc4Excision repair cross-complementation group 4. (899 aa)
xpaXeroderma pigmentosum, complementation group A. (273 aa)
polr2gPolymerase (RNA) II (DNA directed) polypeptide G-like. (171 aa)
actbUncharacterized protein. (375 aa)
vwa5b2Von Willebrand factor A domain containing 5B2. (1017 aa)
ENSSPAP00000020655Ubiquitin-conjugating enzyme E2 variant 2. (145 aa)
polr2iDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
aqrAquarius intron-binding spliceosomal factor. (1472 aa)
pole3Polymerase (DNA directed), epsilon 3 (p17 subunit). (149 aa)
rfc5Replication factor C (activator 1) 5. (335 aa)
LOC103366963Small ubiquitin-related modifier. (101 aa)
ercc5Excision repair cross-complementation group 5. (1139 aa)
LOC103371563E1A binding protein p300 a. (2869 aa)
LOC103371583General transcription factor IIH subunit. (390 aa)
LOC103372741Protein inhibitor of activated STAT, 1b. (544 aa)
nfrkbNuclear factor related to kappaB binding protein. (1278 aa)
uvssaUV-stimulated scaffold protein A. (743 aa)
lig1DNA ligase. (978 aa)
ube2iUbiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
tcea1Transcription elongation factor A (SII), 1. (311 aa)
ZNF830Zinc finger protein 830. (345 aa)
LOC103365223SCY domain-containing protein. (126 aa)
pole4Polymerase (DNA-directed), epsilon 4, accessory subunit. (167 aa)
polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1955 aa)
ino80eINO80 complex subunit E. (229 aa)
ep300E1A binding protein p300 b. (2872 aa)
POLR2ERNA polymerase II subunit E. (210 aa)
chd1lChromodomain helicase DNA binding protein 1-like. (949 aa)
rbx1Ring-box 1, E3 ubiquitin protein ligase. (146 aa)
cops7aCOP9 constitutive photomorphogenic homolog subunit 7A. (268 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (528 aa)
LOC103365252Si:ch73-290k24.6. (823 aa)
ENSSPAP00000024898Uncharacterized protein. (245 aa)
ENSSPAP00000025164Rad60-SLD domain-containing protein. (149 aa)
parp1Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1001 aa)
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2233 aa)
LOC103373818DNA-directed RNA polymerase II subunit RPB2-like. (501 aa)
cetn3Centrin 3. (167 aa)
ENSSPAP00000025562Polymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
pias1Protein inhibitor of activated STAT, 1a. (698 aa)
polr2kUncharacterized protein. (59 aa)
polr2fPolymerase (RNA) II (DNA directed) polypeptide F. (144 aa)
LOC103358109UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
cops2COP9 signalosome subunit 2. (443 aa)
usp45Ubiquitin carboxyl-terminal hydrolase. (810 aa)
usp40Ubiquitin specific peptidase 40; Belongs to the peptidase C19 family. (1296 aa)
cops8COP9 signalosome subunit 8. (194 aa)
tceanc2Uncharacterized protein. (219 aa)
LOC103353782Ubiquitin-like domain-containing protein. (131 aa)
DDB2DNA damage-binding protein 2-like. (496 aa)
rfc1Replication factor C subunit 1. (1187 aa)
gtf2h1General transcription factor IIH, polypeptide 1. (550 aa)
RCBTB1-2RCC1 and BTB domain containing protein 1. (531 aa)
ENSSPAP00000028127Protein phosphatase 1, regulatory subunit 42. (295 aa)
cops5COP9 signalosome subunit 5. (334 aa)
polkPolymerase (DNA directed) kappa. (878 aa)
cops4COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis). (406 aa)
LOC103354886Small ubiquitin-related modifier. (96 aa)
kxd1KxDL motif containing 1. (184 aa)
ercc1Excision repair cross-complementation group 1. (361 aa)
cdk7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (343 aa)
ENSSPAP00000029109ISY1 splicing factor homolog. (270 aa)
ercc8Excision repair cross-complementation group 8. (401 aa)
polr2jPolymerase (RNA) II (DNA directed) polypeptide J. (117 aa)
LOC103364319Excision repair cross-complementation group 6. (1449 aa)
rps27aRibosomal protein S27a. (156 aa)
LOC103370190Ubiquitin-like domain-containing protein. (112 aa)
pold1DNA polymerase. (1105 aa)
LOC103361719DNA polymerase delta subunit 3-like. (407 aa)
LOC103356759Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (531 aa)
cul4bCullin 4B; Belongs to the cullin family. (857 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (600 aa)
ddb1Damage-specific DNA binding protein 1. (1085 aa)
LOC103359556High mobility group nucleosome binding domain 6. (89 aa)
ube2nUbiquitin-conjugating enzyme E2Na; Belongs to the ubiquitin-conjugating enzyme family. (149 aa)
xpcXeroderma pigmentosum, complementation group C. (864 aa)
LOC103367858Transcription elongation factor A (SII), 2. (306 aa)
atad5ATPase family AAA domain containing 5b. (892 aa)
LOC103354071Uncharacterized protein. (474 aa)
LOC103365100Uncharacterized protein. (375 aa)
TCEANCTranscription elongation factor A N-terminal and central domain containing. (348 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (597 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
LOC103364049Centrin 4. (171 aa)
gps1G protein pathway suppressor 1. (473 aa)
ddb2Damage-specific DNA-binding protein 2. (496 aa)
LOC103357898Si:ch73-1a9.3. (77 aa)
rfc3Replication factor C (activator 1) 3. (356 aa)
meiobMethionine sulfoxide reductase B1b. (430 aa)
LOC103369122Ubiquitin-like domain-containing protein. (164 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
xrcc1X-ray repair complementing defective repair in Chinese hamster cells 1. (578 aa)
parp2Poly [ADP-ribose] polymerase. (650 aa)
pold2Polymerase (DNA directed), delta 2, regulatory subunit. (472 aa)
rpa2Replication protein A2. (293 aa)
ppiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (302 aa)
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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