STRINGSTRING
LOC103354071 LOC103354071 atad5 atad5 xpc xpc ube2n ube2n ddb1 ddb1 rpa1 rpa1 cul4b cul4b LOC103356759 LOC103356759 LOC103361719 LOC103361719 pold1 pold1 LOC103370190 LOC103370190 RCBTB1 RCBTB1 cops3 cops3 ino80d ino80d LOC103360719 LOC103360719 rnf111 rnf111 LOC103371831 LOC103371831 ino80 ino80 parp3 parp3 pold4 pold4 rad23a rad23a actr8 actr8 rpa3 rpa3 gtf2h4 gtf2h4 cul4a cul4a ercc3 ercc3 ino80b ino80b rfc2 rfc2 tfpt tfpt gtf2h5 gtf2h5 gtf2h3 gtf2h3 rad23b rad23b COPS6 COPS6 actr5 actr5 UBB UBB LOC103372802 LOC103372802 ino80c ino80c ercc2 ercc2 ENSSPAP00000001828 ENSSPAP00000001828 pcna pcna ruvbl1 ruvbl1 ccnh ccnh YY1 YY1 ENSSPAP00000000829 ENSSPAP00000000829 RFC4 RFC4 LOC103354944 LOC103354944 LOC103355474 LOC103355474 mcrs1 mcrs1 nfrkb nfrkb LOC103372741 LOC103372741 LOC103371583 LOC103371583 rps27a rps27a cdk7 cdk7 ercc1 ercc1 kxd1 kxd1 LOC103354886 LOC103354886 cops4 cops4 polk polk cops5 cops5 RCBTB1-2 RCBTB1-2 gtf2h1 gtf2h1 rfc1 rfc1 DDB2 DDB2 LOC103353782 LOC103353782 cops8 cops8 usp45 usp45 cops2 cops2 LOC103358109 LOC103358109 pias1 pias1 cetn3 cetn3 pole pole parp1 parp1 ENSSPAP00000025164 ENSSPAP00000025164 ENSSPAP00000024898 ENSSPAP00000024898 LOC103365252 LOC103365252 pole2 pole2 cops7a cops7a rbx1 rbx1 chd1l chd1l ino80e ino80e pole4 pole4 LOC103365223 LOC103365223 ube2i ube2i ercc5 ercc5 LOC103366963 LOC103366963 rfc5 rfc5 pole3 pole3 ENSSPAP00000020655 ENSSPAP00000020655 vwa5b2 vwa5b2 actb actb xpa xpa ercc4 ercc4 sumo2 sumo2 rpap3 rpap3 ube2v1 ube2v1 LOC103374290 LOC103374290 rcbtb2 rcbtb2 LOC103358548 LOC103358548 LOC103358882 LOC103358882 mnat1 mnat1 bivm bivm rpa2 rpa2 pold2 pold2 parp2 parp2 LOC103369122 LOC103369122 meiob meiob rfc3 rfc3 ddb2 ddb2 gps1 gps1 LOC103364049 LOC103364049 uba52 uba52 RPA1 RPA1 LOC103365100 LOC103365100
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC103354071Uncharacterized protein. (474 aa)
atad5ATPase family AAA domain containing 5b. (892 aa)
xpcXeroderma pigmentosum, complementation group C. (864 aa)
ube2nUbiquitin-conjugating enzyme E2Na; Belongs to the ubiquitin-conjugating enzyme family. (149 aa)
ddb1Damage-specific DNA binding protein 1. (1085 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (600 aa)
cul4bCullin 4B; Belongs to the cullin family. (857 aa)
LOC103356759Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (531 aa)
LOC103361719DNA polymerase delta subunit 3-like. (407 aa)
pold1DNA polymerase. (1105 aa)
LOC103370190Ubiquitin-like domain-containing protein. (112 aa)
RCBTB1RCC1 and BTB domain containing protein 1. (484 aa)
cops3COP9 signalosome subunit 3. (423 aa)
ino80dINO80 complex subunit Da. (1000 aa)
LOC103360719ATPase family AAA domain containing 5a. (1480 aa)
rnf111Ring finger protein 111. (1027 aa)
LOC103371831Potassium channel tetramerization domain containing 2. (277 aa)
ino80INO80 complex ATPase subunit. (1467 aa)
parp3Poly [ADP-ribose] polymerase. (529 aa)
pold4Si:dkey-28b4.7. (108 aa)
rad23aRAD23 homolog A, nucleotide excision repair protein a. (376 aa)
actr8Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily. (644 aa)
rpa3Replication protein A3. (122 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (463 aa)
cul4aCullin 4A; Belongs to the cullin family. (766 aa)
ercc3Excision repair cross-complementation group 3. (783 aa)
ino80bINO80 complex subunit B. (320 aa)
rfc2Replication factor C (activator 1) 2. (352 aa)
tfptTCF3 (E2A) fusion partner. (199 aa)
gtf2h5General transcription factor IIH, polypeptide 5. (71 aa)
gtf2h3General transcription factor IIH, polypeptide 3. (300 aa)
rad23bRAD23 homolog B, nucleotide excision repair protein. (388 aa)
COPS6COP9 signalosome subunit 6. (316 aa)
actr5Actin related protein 5; Belongs to the actin family. (610 aa)
UBBUbiquitin B. (258 aa)
LOC103372802Uncharacterized protein. (445 aa)
ino80cINO80 complex subunit C. (198 aa)
ercc2Excision repair cross-complementation group 2. (760 aa)
ENSSPAP00000001828Si:dkey-117m1.4. (678 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
ruvbl1RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (456 aa)
ccnhCyclin H; Belongs to the cyclin family. (319 aa)
YY1YY1 transcription factor b. (364 aa)
ENSSPAP00000000829Uncharacterized protein. (480 aa)
RFC4Replication factor C subunit 4. (326 aa)
LOC103354944WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family. (543 aa)
LOC103355474Replication factor C (activator 1) 4. (330 aa)
mcrs1Microspherule protein 1. (467 aa)
nfrkbNuclear factor related to kappaB binding protein. (1278 aa)
LOC103372741Protein inhibitor of activated STAT, 1b. (544 aa)
LOC103371583General transcription factor IIH subunit. (390 aa)
rps27aRibosomal protein S27a. (156 aa)
cdk7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (343 aa)
ercc1Excision repair cross-complementation group 1. (361 aa)
kxd1KxDL motif containing 1. (184 aa)
LOC103354886Small ubiquitin-related modifier. (96 aa)
cops4COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis). (406 aa)
polkPolymerase (DNA directed) kappa. (878 aa)
cops5COP9 signalosome subunit 5. (334 aa)
RCBTB1-2RCC1 and BTB domain containing protein 1. (531 aa)
gtf2h1General transcription factor IIH, polypeptide 1. (550 aa)
rfc1Replication factor C subunit 1. (1187 aa)
DDB2DNA damage-binding protein 2-like. (496 aa)
LOC103353782Ubiquitin-like domain-containing protein. (131 aa)
cops8COP9 signalosome subunit 8. (194 aa)
usp45Ubiquitin carboxyl-terminal hydrolase. (810 aa)
cops2COP9 signalosome subunit 2. (443 aa)
LOC103358109UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
pias1Protein inhibitor of activated STAT, 1a. (698 aa)
cetn3Centrin 3. (167 aa)
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2233 aa)
parp1Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1001 aa)
ENSSPAP00000025164Rad60-SLD domain-containing protein. (149 aa)
ENSSPAP00000024898Uncharacterized protein. (245 aa)
LOC103365252Si:ch73-290k24.6. (823 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (528 aa)
cops7aCOP9 constitutive photomorphogenic homolog subunit 7A. (268 aa)
rbx1Ring-box 1, E3 ubiquitin protein ligase. (146 aa)
chd1lChromodomain helicase DNA binding protein 1-like. (949 aa)
ino80eINO80 complex subunit E. (229 aa)
pole4Polymerase (DNA-directed), epsilon 4, accessory subunit. (167 aa)
LOC103365223SCY domain-containing protein. (126 aa)
ube2iUbiquitin-conjugating enzyme E2Ib; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
ercc5Excision repair cross-complementation group 5. (1139 aa)
LOC103366963Small ubiquitin-related modifier. (101 aa)
rfc5Replication factor C (activator 1) 5. (335 aa)
pole3Polymerase (DNA directed), epsilon 3 (p17 subunit). (149 aa)
ENSSPAP00000020655Ubiquitin-conjugating enzyme E2 variant 2. (145 aa)
vwa5b2Von Willebrand factor A domain containing 5B2. (1017 aa)
actbUncharacterized protein. (375 aa)
xpaXeroderma pigmentosum, complementation group A. (273 aa)
ercc4Excision repair cross-complementation group 4. (899 aa)
sumo2Rad60-SLD domain-containing protein. (71 aa)
rpap3RNA polymerase II associated protein 3. (641 aa)
ube2v1Ubiquitin-conjugating enzyme E2 variant 1. (149 aa)
LOC103374290WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family. (473 aa)
rcbtb2Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (527 aa)
LOC103358548UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
LOC103358882YY1 transcription factor. (350 aa)
mnat1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (311 aa)
bivmBasic, immunoglobulin-like variable motif containing. (500 aa)
rpa2Replication protein A2. (293 aa)
pold2Polymerase (DNA directed), delta 2, regulatory subunit. (472 aa)
parp2Poly [ADP-ribose] polymerase. (650 aa)
LOC103369122Ubiquitin-like domain-containing protein. (164 aa)
meiobMethionine sulfoxide reductase B1b. (430 aa)
rfc3Replication factor C (activator 1) 3. (356 aa)
ddb2Damage-specific DNA-binding protein 2. (496 aa)
gps1G protein pathway suppressor 1. (473 aa)
LOC103364049Centrin 4. (171 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (597 aa)
LOC103365100Uncharacterized protein. (375 aa)
Your Current Organism:
Stegastes partitus
NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish
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