42 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	irf2	Interferon regulatory factor. (330 aa)
	LOC103362510	IRF tryptophan pentad repeat domain-containing protein. (268 aa)
	LOC103370817	Interferon regulatory factor 4-like. (464 aa)
	LOC103370835	Interferon regulatory factor 10. (404 aa)
	rsad2	Radical S-adenosyl methionine domain containing 2. (442 aa)
	kpnb1	Karyopherin (importin) beta 1. (876 aa)
	usp18	Ubiquitin specific peptidase 18; Belongs to the peptidase C19 family. (339 aa)
	ENSSPAP00000028283	Uncharacterized protein. (180 aa)
	xaf1	XIAP associated factor 1. (253 aa)
	LOC103372658	Uncharacterized protein. (228 aa)
	irf8	Interferon regulatory factor 8. (419 aa)
	ifna21	Uncharacterized protein. (160 aa)
	irf6	Interferon regulatory factor 6. (483 aa)
	LOC103370704	Uncharacterized protein. (218 aa)
	ifngr1l	Uncharacterized protein. (389 aa)
	LOC103357838	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (593 aa)
	ifi35	Interferon-induced protein 35. (356 aa)
	infgr1	Fibronectin type-III domain-containing protein. (411 aa)
	LOC103375332	Signal transducer and activator of transcription. (764 aa)
	ENSSPAP00000015538	Uncharacterized protein. (216 aa)
	LOC103370779	Uncharacterized protein. (184 aa)
	ptpn11	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (602 aa)
	LOC103375069	Uncharacterized protein. (100 aa)
	abce1	ATP-binding cassette, sub-family E (OABP), member 1. (431 aa)
	LOC103361030	Uncharacterized protein. (564 aa)
	kpna1	Importin subunit alpha; Belongs to the importin alpha family. (538 aa)
	ptpn6	Protein tyrosine phosphatase non-receptor type 6. (570 aa)
	LOC103373247	Suppressor of cytokine signaling 3a. (205 aa)
	LOC103368953	Interferon regulatory factor 4a. (464 aa)
	irf4	Interferon regulatory factor 4b. (448 aa)
	ENSSPAP00000006900	Fibronectin type-III domain-containing protein. (334 aa)
	irf1	Interferon regulatory factor. (292 aa)
	stat2	Signal transducer and activator of transcription. (815 aa)
	ptpn1	Tyrosine-protein phosphatase non-receptor type. (438 aa)
	irf5	Interferon regulatory factor 5. (492 aa)
	LOC103375488	Ig-like domain-containing protein; Belongs to the MHC class I family. (396 aa)
	ENSSPAP00000019954	Uncharacterized protein. (185 aa)
	jak1	Tyrosine-protein kinase. (1177 aa)
	socs1	Suppressor of cytokine signaling 1a. (204 aa)
	ENSSPAP00000021168	Uncharacterized protein. (125 aa)
	LOC103355582	Uncharacterized protein. (416 aa)
	LOC103355603	Interfer-bind domain-containing protein. (199 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000006900	ENSSPAP00000015538	ENSSPAP00000006900	ENSSPAP00000015538	Fibronectin type-III domain-containing protein.	Uncharacterized protein.	0.493
ENSSPAP00000006900	ENSSPAP00000019954	ENSSPAP00000006900	ENSSPAP00000019954	Fibronectin type-III domain-containing protein.	Uncharacterized protein.	0.709
ENSSPAP00000006900	ENSSPAP00000021168	ENSSPAP00000006900	ENSSPAP00000021168	Fibronectin type-III domain-containing protein.	Uncharacterized protein.	0.804
ENSSPAP00000006900	ENSSPAP00000028283	ENSSPAP00000006900	ENSSPAP00000028283	Fibronectin type-III domain-containing protein.	Uncharacterized protein.	0.804
ENSSPAP00000006900	LOC103355603	ENSSPAP00000006900	ENSSPAP00000006933	Fibronectin type-III domain-containing protein.	Interfer-bind domain-containing protein.	0.897
ENSSPAP00000006900	LOC103357838	ENSSPAP00000006900	ENSSPAP00000012523	Fibronectin type-III domain-containing protein.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.527
ENSSPAP00000006900	LOC103361030	ENSSPAP00000006900	ENSSPAP00000003939	Fibronectin type-III domain-containing protein.	Uncharacterized protein.	0.877
ENSSPAP00000006900	LOC103370704	ENSSPAP00000006900	ENSSPAP00000012426	Fibronectin type-III domain-containing protein.	Uncharacterized protein.	0.638
ENSSPAP00000006900	LOC103370779	ENSSPAP00000006900	ENSSPAP00000015559	Fibronectin type-III domain-containing protein.	Uncharacterized protein.	0.709
ENSSPAP00000006900	LOC103372658	ENSSPAP00000006900	ENSSPAP00000029685	Fibronectin type-III domain-containing protein.	Uncharacterized protein.	0.605
ENSSPAP00000006900	LOC103373247	ENSSPAP00000006900	ENSSPAP00000005259	Fibronectin type-III domain-containing protein.	Suppressor of cytokine signaling 3a.	0.605
ENSSPAP00000006900	LOC103375332	ENSSPAP00000006900	ENSSPAP00000014755	Fibronectin type-III domain-containing protein.	Signal transducer and activator of transcription.	0.796
ENSSPAP00000006900	ifna21	ENSSPAP00000006900	ENSSPAP00000009750	Fibronectin type-III domain-containing protein.	Uncharacterized protein.	0.917
ENSSPAP00000006900	ifngr1l	ENSSPAP00000006900	ENSSPAP00000012454	Fibronectin type-III domain-containing protein.	Uncharacterized protein.	0.851
ENSSPAP00000006900	infgr1	ENSSPAP00000006900	ENSSPAP00000014026	Fibronectin type-III domain-containing protein.	Fibronectin type-III domain-containing protein.	0.756
ENSSPAP00000006900	jak1	ENSSPAP00000006900	ENSSPAP00000019984	Fibronectin type-III domain-containing protein.	Tyrosine-protein kinase.	0.866
ENSSPAP00000006900	ptpn11	ENSSPAP00000006900	ENSSPAP00000015764	Fibronectin type-III domain-containing protein.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.527
ENSSPAP00000006900	ptpn6	ENSSPAP00000006900	ENSSPAP00000005164	Fibronectin type-III domain-containing protein.	Protein tyrosine phosphatase non-receptor type 6.	0.527
ENSSPAP00000006900	socs1	ENSSPAP00000006900	ENSSPAP00000020567	Fibronectin type-III domain-containing protein.	Suppressor of cytokine signaling 1a.	0.806
ENSSPAP00000006900	stat2	ENSSPAP00000006900	ENSSPAP00000017208	Fibronectin type-III domain-containing protein.	Signal transducer and activator of transcription.	0.800