20 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSPAP00000026393	5-hydroxytryptamine (serotonin) receptor 7b. (409 aa)
	ENSSPAP00000024763	BTB domain-containing protein. (203 aa)
	LOC103357286	Zinc finger, FYVE domain containing 1. (774 aa)
	ENSSPAP00000024745	Uncharacterized protein. (117 aa)
	CUL3	Cullin 3; Belongs to the cullin family. (766 aa)
	LOC103369702	Si:ch211-11n16.2. (610 aa)
	ENSSPAP00000018225	5-hydroxytryptamine (serotonin) receptor 7a; Belongs to the G-protein coupled receptor 1 family. (448 aa)
	RAB9A	RAB9A, member RAS oncogene family. (206 aa)
	ccne1	Cyclin E1; Belongs to the cyclin family. (433 aa)
	vhl	Von Hippel-Lindau tumor suppressor. (167 aa)
	plin4	Perilipin; Belongs to the perilipin family. (426 aa)
	ENSSPAP00000014896	Uncharacterized protein. (217 aa)
	lrrc41	Uncharacterized protein. (661 aa)
	hgs	Hepatocyte growth factor-regulated tyrosine kinase substrate. (766 aa)
	ENSSPAP00000012938	RAB9B, member RAS oncogene family. (219 aa)
	ZFYVE1	Uncharacterized protein. (786 aa)
	ENSSPAP00000027191	Uncharacterized protein. (127 aa)
	zfyve19	Zinc finger, FYVE domain containing 19. (429 aa)
	cul3	CULLIN_2 domain-containing protein; Belongs to the cullin family. (767 aa)
	plin2	Perilipin; Belongs to the perilipin family. (421 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUL3	ENSSPAP00000024745	ENSSPAP00000019914	ENSSPAP00000024745	Cullin 3; Belongs to the cullin family.	Uncharacterized protein.	0.759
CUL3	ENSSPAP00000024763	ENSSPAP00000019914	ENSSPAP00000024763	Cullin 3; Belongs to the cullin family.	BTB domain-containing protein.	0.759
CUL3	ENSSPAP00000027191	ENSSPAP00000019914	ENSSPAP00000027191	Cullin 3; Belongs to the cullin family.	Uncharacterized protein.	0.471
CUL3	ccne1	ENSSPAP00000019914	ENSSPAP00000002808	Cullin 3; Belongs to the cullin family.	Cyclin E1; Belongs to the cyclin family.	0.778
CUL3	cul3	ENSSPAP00000019914	ENSSPAP00000026553	Cullin 3; Belongs to the cullin family.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.898
CUL3	lrrc41	ENSSPAP00000019914	ENSSPAP00000014549	Cullin 3; Belongs to the cullin family.	Uncharacterized protein.	0.401
CUL3	plin2	ENSSPAP00000019914	ENSSPAP00000025438	Cullin 3; Belongs to the cullin family.	Perilipin; Belongs to the perilipin family.	0.471
CUL3	plin4	ENSSPAP00000019914	ENSSPAP00000000929	Cullin 3; Belongs to the cullin family.	Perilipin; Belongs to the perilipin family.	0.471
CUL3	vhl	ENSSPAP00000019914	ENSSPAP00000001361	Cullin 3; Belongs to the cullin family.	Von Hippel-Lindau tumor suppressor.	0.626
ENSSPAP00000012938	ENSSPAP00000014896	ENSSPAP00000012938	ENSSPAP00000014896	RAB9B, member RAS oncogene family.	Uncharacterized protein.	0.899
ENSSPAP00000012938	ENSSPAP00000024745	ENSSPAP00000012938	ENSSPAP00000024745	RAB9B, member RAS oncogene family.	Uncharacterized protein.	0.628
ENSSPAP00000012938	ENSSPAP00000024763	ENSSPAP00000012938	ENSSPAP00000024763	RAB9B, member RAS oncogene family.	BTB domain-containing protein.	0.628
ENSSPAP00000012938	ENSSPAP00000027191	ENSSPAP00000012938	ENSSPAP00000027191	RAB9B, member RAS oncogene family.	Uncharacterized protein.	0.525
ENSSPAP00000012938	RAB9A	ENSSPAP00000012938	ENSSPAP00000010386	RAB9B, member RAS oncogene family.	RAB9A, member RAS oncogene family.	0.899
ENSSPAP00000012938	plin2	ENSSPAP00000012938	ENSSPAP00000025438	RAB9B, member RAS oncogene family.	Perilipin; Belongs to the perilipin family.	0.525
ENSSPAP00000012938	plin4	ENSSPAP00000012938	ENSSPAP00000000929	RAB9B, member RAS oncogene family.	Perilipin; Belongs to the perilipin family.	0.525
ENSSPAP00000014896	ENSSPAP00000012938	ENSSPAP00000014896	ENSSPAP00000012938	Uncharacterized protein.	RAB9B, member RAS oncogene family.	0.899
ENSSPAP00000014896	ENSSPAP00000024745	ENSSPAP00000014896	ENSSPAP00000024745	Uncharacterized protein.	Uncharacterized protein.	0.628
ENSSPAP00000014896	ENSSPAP00000024763	ENSSPAP00000014896	ENSSPAP00000024763	Uncharacterized protein.	BTB domain-containing protein.	0.628
ENSSPAP00000014896	ENSSPAP00000027191	ENSSPAP00000014896	ENSSPAP00000027191	Uncharacterized protein.	Uncharacterized protein.	0.525