3 items (Stegastes partitus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103365098	Smith-Magenis syndrome chromosome region, candidate 8b. (905 aa)
	smcr8	Smith-Magenis syndrome chromosome region, candidate 8a. (849 aa)
	flcn	Folliculin. (559 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103365098	flcn	ENSSPAP00000014602	ENSSPAP00000021875	Smith-Magenis syndrome chromosome region, candidate 8b.	Folliculin.	0.482
LOC103365098	smcr8	ENSSPAP00000014602	ENSSPAP00000007968	Smith-Magenis syndrome chromosome region, candidate 8b.	Smith-Magenis syndrome chromosome region, candidate 8a.	0.905
flcn	LOC103365098	ENSSPAP00000021875	ENSSPAP00000014602	Folliculin.	Smith-Magenis syndrome chromosome region, candidate 8b.	0.482
flcn	smcr8	ENSSPAP00000021875	ENSSPAP00000007968	Folliculin.	Smith-Magenis syndrome chromosome region, candidate 8a.	0.482
smcr8	LOC103365098	ENSSPAP00000007968	ENSSPAP00000014602	Smith-Magenis syndrome chromosome region, candidate 8a.	Smith-Magenis syndrome chromosome region, candidate 8b.	0.905
smcr8	flcn	ENSSPAP00000007968	ENSSPAP00000021875	Smith-Magenis syndrome chromosome region, candidate 8a.	Folliculin.	0.482