(38 nodes) DNA binding domain with preference for A/T rich regions network (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103361285	Uncharacterized protein. (2155 aa)
	prdm10	PR domain containing 10. (1169 aa)
	LOC103356527	Uncharacterized protein. (1928 aa)
	LOC103376272	High mobility group protein HMG-I/HMG-Y-like. (91 aa)
	setbp1	SET binding protein 1. (1530 aa)
	ENSSPAP00000028630	Uncharacterized protein. (415 aa)
	LOC103366417	Thymine DNA glycosylase, tandem duplicate 2. (399 aa)
	pds5a	PDS5 cohesin associated factor A. (1294 aa)
	zbtb48	Zinc finger and BTB domain containing 48. (564 aa)
	ENSSPAP00000025974	Uncharacterized protein. (98 aa)
	ENSSPAP00000025949	Uncharacterized protein. (145 aa)
	kat6b	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (2156 aa)
	zbtb24	Zinc finger and BTB domain containing 24. (668 aa)
	ENSSPAP00000023218	Chromobox homolog 2 (Drosophila Pc class). (484 aa)
	mynn	Myoneurin. (793 aa)
	znf668	Zinc finger protein 668. (513 aa)
	ahdc1	AT hook, DNA binding motif, containing 1. (1402 aa)
	dot1l	Histone-lysine N-methyltransferase, H3 lysine-79 specific. (1407 aa)
	baz2a	Bromodomain adjacent to zinc finger domain, 2A. (2684 aa)
	LOC103354675	Zgc:77151. (514 aa)
	chd3	Chromodomain helicase DNA binding protein 3. (2109 aa)
	zbtb11	Zinc finger and BTB domain containing 11. (1174 aa)
	pds5b	PDS5 cohesin associated factor B. (1407 aa)
	lcorl	Ligand dependent nuclear receptor corepressor-like. (1999 aa)
	kat6a	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (2277 aa)
	LOC103374180	CCCTC-binding factor (zinc finger protein). (755 aa)
	phip	Pleckstrin homology domain interacting protein. (1829 aa)
	ENSSPAP00000011206	High mobility group AT-hook 2. (108 aa)
	znf292	Zinc finger protein 292b. (2484 aa)
	LOC103362742	Uncharacterized protein. (120 aa)
	ENSSPAP00000007616	Uncharacterized protein. (744 aa)
	ctcf	CCCTC-binding factor (zinc finger protein). (873 aa)
	LOC103356322	Ash1 (absent, small, or homeotic)-like (Drosophila). (2963 aa)
	phf21a	PHD finger protein 21Ab. (769 aa)
	LOC103375110	Uncharacterized protein. (347 aa)
	ENSSPAP00000001950	Uncharacterized protein. (665 aa)
	srcap	Snf2-related CREBBP activator protein. (4294 aa)
	LOC103355299	Uncharacterized protein. (91 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000001950	LOC103356322	ENSSPAP00000001950	ENSSPAP00000004428	Uncharacterized protein.	Ash1 (absent, small, or homeotic)-like (Drosophila).	0.764
ENSSPAP00000001950	LOC103356527	ENSSPAP00000001950	ENSSPAP00000029906	Uncharacterized protein.	Uncharacterized protein.	0.764
ENSSPAP00000001950	dot1l	ENSSPAP00000001950	ENSSPAP00000021663	Uncharacterized protein.	Histone-lysine N-methyltransferase, H3 lysine-79 specific.	0.775
ENSSPAP00000001950	setbp1	ENSSPAP00000001950	ENSSPAP00000029083	Uncharacterized protein.	SET binding protein 1.	0.591
ENSSPAP00000001950	srcap	ENSSPAP00000001950	ENSSPAP00000001876	Uncharacterized protein.	Snf2-related CREBBP activator protein.	0.450
ENSSPAP00000007616	chd3	ENSSPAP00000007616	ENSSPAP00000018183	Uncharacterized protein.	Chromodomain helicase DNA binding protein 3.	0.459
ENSSPAP00000007616	phf21a	ENSSPAP00000007616	ENSSPAP00000004043	Uncharacterized protein.	PHD finger protein 21Ab.	0.438
ENSSPAP00000007616	srcap	ENSSPAP00000007616	ENSSPAP00000001876	Uncharacterized protein.	Snf2-related CREBBP activator protein.	0.431
ENSSPAP00000011206	LOC103355299	ENSSPAP00000011206	ENSSPAP00000000167	High mobility group AT-hook 2.	Uncharacterized protein.	0.641
ENSSPAP00000011206	LOC103376272	ENSSPAP00000011206	ENSSPAP00000029810	High mobility group AT-hook 2.	High mobility group protein HMG-I/HMG-Y-like.	0.641
ENSSPAP00000023218	LOC103356322	ENSSPAP00000023218	ENSSPAP00000004428	Chromobox homolog 2 (Drosophila Pc class).	Ash1 (absent, small, or homeotic)-like (Drosophila).	0.409
ENSSPAP00000023218	LOC103356527	ENSSPAP00000023218	ENSSPAP00000029906	Chromobox homolog 2 (Drosophila Pc class).	Uncharacterized protein.	0.409
ENSSPAP00000023218	setbp1	ENSSPAP00000023218	ENSSPAP00000029083	Chromobox homolog 2 (Drosophila Pc class).	SET binding protein 1.	0.404
ENSSPAP00000028630	chd3	ENSSPAP00000028630	ENSSPAP00000018183	Uncharacterized protein.	Chromodomain helicase DNA binding protein 3.	0.438
ENSSPAP00000028630	phf21a	ENSSPAP00000028630	ENSSPAP00000004043	Uncharacterized protein.	PHD finger protein 21Ab.	0.438
ENSSPAP00000028630	srcap	ENSSPAP00000028630	ENSSPAP00000001876	Uncharacterized protein.	Snf2-related CREBBP activator protein.	0.431
LOC103354675	chd3	ENSSPAP00000019586	ENSSPAP00000018183	Zgc:77151.	Chromodomain helicase DNA binding protein 3.	0.412
LOC103354675	phf21a	ENSSPAP00000019586	ENSSPAP00000004043	Zgc:77151.	PHD finger protein 21Ab.	0.412
LOC103354675	srcap	ENSSPAP00000019586	ENSSPAP00000001876	Zgc:77151.	Snf2-related CREBBP activator protein.	0.414
LOC103355299	ENSSPAP00000011206	ENSSPAP00000000167	ENSSPAP00000011206	Uncharacterized protein.	High mobility group AT-hook 2.	0.641