(31 nodes) Phenylalanine metabolism network (Stegastes partitus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	got2	Aspartate aminotransferase. (428 aa)
	tat	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate. (464 aa)
	LOC103357544	Aldehyde dehydrogenase 1 family, member A3; Belongs to the aldehyde dehydrogenase family. (504 aa)
	LOC103368817	D-dopachrome tautomerase. (118 aa)
	GOT1	Aspartate aminotransferase. (354 aa)
	il4i1	Amine oxidase. (510 aa)
	LOC103357480	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (498 aa)
	LOC103374995	Amine oxidase. (523 aa)
	mif	Macrophage migration inhibitory factor. (115 aa)
	maob	Amine oxidase. (491 aa)
	LOC103363687	4-hydroxyphenylpyruvate dioxygenase. (395 aa)
	ENSSPAP00000021862	C3H1-type domain-containing protein. (479 aa)
	hpdl	4-hydroxyphenylpyruvate dioxygenase. (442 aa)
	got1	Aspartate aminotransferase. (415 aa)
	LOC103375816	4-hydroxyphenylpyruvate dioxygenase. (352 aa)
	LOC103358488	Si:dkey-76k16.5. (278 aa)
	LOC103371247	Amine oxidase. (812 aa)
	KATNAL2	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays. (367 aa)
	LOC103354599	AAA domain-containing protein. (755 aa)
	LOC103374795	Amine oxidase. (527 aa)
	faah2	Fatty acid amide hydrolase 2b. (529 aa)
	aldh3b1	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (469 aa)
	memo1	Mediator of cell motility 1. (297 aa)
	SPAST	Spastin; Belongs to the AAA ATPase family. (477 aa)
	FIGNL2	Fidgetin like 2. (684 aa)
	pah	Phenylalanine hydroxylase. (460 aa)
	faah	Fatty acid amide hydrolase. (587 aa)
	ENSSPAP00000002357	Si:dkey-195m11.8. (193 aa)
	fign	Fidgetin; Belongs to the AAA ATPase family. (751 aa)
	fignl1	Fidgetin-like 1; Belongs to the AAA ATPase family. (647 aa)
	LOC103357664	Glutamic-oxaloacetic transaminase 1 like 1. (430 aa)

Your Current Organism:

Stegastes partitus

NCBI taxonomy Id: 144197
Other names: S. partitus, bicolor damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSPAP00000002357	GOT1	ENSSPAP00000002357	ENSSPAP00000026519	Si:dkey-195m11.8.	Aspartate aminotransferase.	0.446
ENSSPAP00000002357	KATNAL2	ENSSPAP00000002357	ENSSPAP00000013651	Si:dkey-195m11.8.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.524
ENSSPAP00000002357	LOC103357664	ENSSPAP00000002357	ENSSPAP00000000129	Si:dkey-195m11.8.	Glutamic-oxaloacetic transaminase 1 like 1.	0.446
ENSSPAP00000002357	LOC103374795	ENSSPAP00000002357	ENSSPAP00000012032	Si:dkey-195m11.8.	Amine oxidase.	0.485
ENSSPAP00000002357	LOC103374995	ENSSPAP00000002357	ENSSPAP00000024858	Si:dkey-195m11.8.	Amine oxidase.	0.585
ENSSPAP00000002357	got1	ENSSPAP00000002357	ENSSPAP00000017865	Si:dkey-195m11.8.	Aspartate aminotransferase.	0.446
ENSSPAP00000002357	got2	ENSSPAP00000002357	ENSSPAP00000012363	Si:dkey-195m11.8.	Aspartate aminotransferase.	0.516
ENSSPAP00000002357	il4i1	ENSSPAP00000002357	ENSSPAP00000026029	Si:dkey-195m11.8.	Amine oxidase.	0.585
ENSSPAP00000002357	maob	ENSSPAP00000002357	ENSSPAP00000023905	Si:dkey-195m11.8.	Amine oxidase.	0.485
ENSSPAP00000002357	pah	ENSSPAP00000002357	ENSSPAP00000004649	Si:dkey-195m11.8.	Phenylalanine hydroxylase.	0.425
ENSSPAP00000002357	tat	ENSSPAP00000002357	ENSSPAP00000031219	Si:dkey-195m11.8.	Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.	0.505
ENSSPAP00000021862	GOT1	ENSSPAP00000021862	ENSSPAP00000026519	C3H1-type domain-containing protein.	Aspartate aminotransferase.	0.616
ENSSPAP00000021862	LOC103357664	ENSSPAP00000021862	ENSSPAP00000000129	C3H1-type domain-containing protein.	Glutamic-oxaloacetic transaminase 1 like 1.	0.616
ENSSPAP00000021862	LOC103363687	ENSSPAP00000021862	ENSSPAP00000023781	C3H1-type domain-containing protein.	4-hydroxyphenylpyruvate dioxygenase.	0.630
ENSSPAP00000021862	LOC103374795	ENSSPAP00000021862	ENSSPAP00000012032	C3H1-type domain-containing protein.	Amine oxidase.	0.510
ENSSPAP00000021862	LOC103375816	ENSSPAP00000021862	ENSSPAP00000015645	C3H1-type domain-containing protein.	4-hydroxyphenylpyruvate dioxygenase.	0.630
ENSSPAP00000021862	got1	ENSSPAP00000021862	ENSSPAP00000017865	C3H1-type domain-containing protein.	Aspartate aminotransferase.	0.616
ENSSPAP00000021862	got2	ENSSPAP00000021862	ENSSPAP00000012363	C3H1-type domain-containing protein.	Aspartate aminotransferase.	0.809
ENSSPAP00000021862	hpdl	ENSSPAP00000021862	ENSSPAP00000020638	C3H1-type domain-containing protein.	4-hydroxyphenylpyruvate dioxygenase.	0.630
ENSSPAP00000021862	maob	ENSSPAP00000021862	ENSSPAP00000023905	C3H1-type domain-containing protein.	Amine oxidase.	0.510