(26 nodes) Mixed, incl. Endodeoxyribonuclease activity, and PD-(D/E)XK nuclease transposase sub-family network (Ectothiorhodospira sp. BSL9)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANB01173.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)
	ANB01452.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (99 aa)
	ANB01456.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (319 aa)
	ANB01458.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (99 aa)
	ANB01459.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (65 aa)
	ANB01460.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
	ANB01471.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	ANB01583.1	Twin-arginine translocation pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)
	ANB01641.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (467 aa)
	ANB03715.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (165 aa)
	ANB02051.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (329 aa)
	ANB02056.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (75 aa)
	ANB03722.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)
	ANB02137.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
	ANB02142.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
	ANB02343.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa)
	ANB02360.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)
	ANB02606.1	Thiol:disulfide interchange protein DsbC; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily. (244 aa)
	ANB02658.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (167 aa)
	ANB02751.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (520 aa)
	ANB02752.1	RelE/StbE family addiction module toxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (89 aa)
	ANB02753.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (76 aa)
	ANB03138.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (159 aa)
	ANB03146.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)
	ANB03185.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)
	ANB03268.1	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (327 aa)

Your Current Organism:

Ectothiorhodospira sp. BSL9

NCBI taxonomy Id: 1442136
Other names: E. sp. BSL-9, Ectothiorhodospira sp. BSL-9

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANB01173.1	ANB01456.1	ECTOBSL9_0224	ECTOBSL9_0569	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.761
ANB01173.1	ANB01460.1	ECTOBSL9_0224	ECTOBSL9_0574	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
ANB01173.1	ANB01471.1	ECTOBSL9_0224	ECTOBSL9_0586	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.551
ANB01173.1	ANB02056.1	ECTOBSL9_0224	ECTOBSL9_1334	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.653
ANB01173.1	ANB02137.1	ECTOBSL9_0224	ECTOBSL9_1440	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
ANB01173.1	ANB02142.1	ECTOBSL9_0224	ECTOBSL9_1447	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.765
ANB01173.1	ANB03138.1	ECTOBSL9_0224	ECTOBSL9_2716	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.538
ANB01173.1	ANB03146.1	ECTOBSL9_0224	ECTOBSL9_2726	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.750
ANB01173.1	ANB03185.1	ECTOBSL9_0224	ECTOBSL9_2776	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.755
ANB01452.1	ANB01456.1	ECTOBSL9_0565	ECTOBSL9_0569	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.506
ANB01452.1	ANB01460.1	ECTOBSL9_0565	ECTOBSL9_0574	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
ANB01452.1	ANB01471.1	ECTOBSL9_0565	ECTOBSL9_0586	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.464
ANB01452.1	ANB02051.1	ECTOBSL9_0565	ECTOBSL9_1328	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.557
ANB01452.1	ANB02137.1	ECTOBSL9_0565	ECTOBSL9_1440	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.504
ANB01452.1	ANB02142.1	ECTOBSL9_0565	ECTOBSL9_1447	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.529
ANB01452.1	ANB03138.1	ECTOBSL9_0565	ECTOBSL9_2716	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.575
ANB01452.1	ANB03146.1	ECTOBSL9_0565	ECTOBSL9_2726	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.727
ANB01452.1	ANB03185.1	ECTOBSL9_0565	ECTOBSL9_2776	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.738
ANB01452.1	ANB03715.1	ECTOBSL9_0565	ECTOBSL9_1266	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.421
ANB01456.1	ANB01173.1	ECTOBSL9_0569	ECTOBSL9_0224	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.761