(17 nodes) Porin activity network (Ectothiorhodospira sp. BSL9)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANB03461.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)
	ANB01027.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (609 aa)
	pal	Lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. (193 aa)
	ANB01514.1	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology. (364 aa)
	ANB01664.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (696 aa)
	ANB03657.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)
	ANB01701.1	Aromatic hydrocarbon degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (462 aa)
	ANB03674.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (389 aa)
	ANB03680.1	Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
	ANB01917.1	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
	ANB03742.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (193 aa)
	ANB02362.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	ANB02449.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (365 aa)
	ANB02699.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
	ANB03858.1	Zinc-regulated TonB-dependent outer membrane receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (440 aa)
	ANB03158.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
	ANB03288.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (703 aa)

Your Current Organism:

Ectothiorhodospira sp. BSL9

NCBI taxonomy Id: 1442136
Other names: E. sp. BSL-9, Ectothiorhodospira sp. BSL-9

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANB01514.1	ANB03288.1	ECTOBSL9_0638	ECTOBSL9_2906	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.518
ANB01917.1	ANB02449.1	ECTOBSL9_1158	ECTOBSL9_1848	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
ANB02449.1	ANB01917.1	ECTOBSL9_1848	ECTOBSL9_1158	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
ANB03288.1	ANB01514.1	ECTOBSL9_2906	ECTOBSL9_0638	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.518