(46 nodes) Transposition network (Ectothiorhodospira sp. BSL9)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANB03955.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)
	ANB01033.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)
	ANB01195.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (163 aa)
	ANB01210.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)
	ANB03596.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (373 aa)
	ANB01450.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (236 aa)
	ANB01451.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
	ANB01453.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
	ANB01459.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (65 aa)
	ANB01461.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
	ANB01467.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)
	ANB01470.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (65 aa)
	ANB01472.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (181 aa)
	ANB03644.1	Transposase; Required for the transposition of the insertion element. (417 aa)
	ANB01570.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (165 aa)
	ANB01581.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (89 aa)
	xerC	Recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (305 aa)
	ANB01981.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
	ANB01993.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)
	ANB03721.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)
	ANB02033.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (165 aa)
	ANB02045.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (96 aa)
	ANB02049.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)
	ANB02052.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)
	ANB03722.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)
	ANB02066.1	Cytosine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)
	ANB03731.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (373 aa)
	ANB02139.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (121 aa)
	ANB02140.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (414 aa)
	ANB02143.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
	ANB02145.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)
	ANB02230.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (466 aa)
	ANB02356.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)
	ANB02736.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (466 aa)
	ANB02742.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (122 aa)
	ANB02780.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)
	ANB02984.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa)
	ANB03100.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (381 aa)
	ANB03104.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (122 aa)
	ANB03148.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (383 aa)
	ANB03908.1	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 'phage' integrase family. (389 aa)
	ANB03909.1	Transposase; Required for the transposition of the insertion element. (417 aa)
	ANB03911.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)
	ANB03915.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)
	ANB03203.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (122 aa)
	ANB03455.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (122 aa)

Your Current Organism:

Ectothiorhodospira sp. BSL9

NCBI taxonomy Id: 1442136
Other names: E. sp. BSL-9, Ectothiorhodospira sp. BSL-9

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANB01033.1	ANB02139.1	ECTOBSL9_0046	ECTOBSL9_1443	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
ANB01033.1	ANB02984.1	ECTOBSL9_0046	ECTOBSL9_2516	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.456
ANB01210.1	ANB03596.1	ECTOBSL9_0268	ECTOBSL9_0337	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.426
ANB01210.1	ANB03731.1	ECTOBSL9_0268	ECTOBSL9_1418	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.426
ANB01450.1	ANB01451.1	ECTOBSL9_0562	ECTOBSL9_0563	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.411
ANB01450.1	ANB01459.1	ECTOBSL9_0562	ECTOBSL9_0573	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.774
ANB01450.1	ANB01470.1	ECTOBSL9_0562	ECTOBSL9_0585	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.774
ANB01451.1	ANB01450.1	ECTOBSL9_0563	ECTOBSL9_0562	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.411
ANB01459.1	ANB01450.1	ECTOBSL9_0573	ECTOBSL9_0562	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
ANB01467.1	ANB02139.1	ECTOBSL9_0582	ECTOBSL9_1443	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
ANB01467.1	ANB02984.1	ECTOBSL9_0582	ECTOBSL9_2516	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.455
ANB01470.1	ANB01450.1	ECTOBSL9_0585	ECTOBSL9_0562	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
ANB01993.1	ANB03596.1	ECTOBSL9_1249	ECTOBSL9_0337	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.416
ANB01993.1	ANB03731.1	ECTOBSL9_1249	ECTOBSL9_1418	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.416
ANB02033.1	ANB03721.1	ECTOBSL9_1302	ECTOBSL9_1301	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.428
ANB02049.1	ANB03596.1	ECTOBSL9_1323	ECTOBSL9_0337	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.426
ANB02049.1	ANB03731.1	ECTOBSL9_1323	ECTOBSL9_1418	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.426
ANB02052.1	ANB03596.1	ECTOBSL9_1329	ECTOBSL9_0337	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.426
ANB02052.1	ANB03731.1	ECTOBSL9_1329	ECTOBSL9_1418	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.426
ANB02066.1	ANB02139.1	ECTOBSL9_1347	ECTOBSL9_1443	Cytosine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.713