(6 nodes) Type I site-specific deoxyribonuclease complex network (Ectothiorhodospira sp. BSL9)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANB02392.1	Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (809 aa)
	ANB01164.1	Restriction endonuclease subunit R; Derived by automated computational analysis using gene prediction method: Protein Homology. (808 aa)
	ANB01166.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)
	ANB01171.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (128 aa)
	ANB02059.1	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S24 family. (1289 aa)
	ANB02393.1	DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (496 aa)

Your Current Organism:

Ectothiorhodospira sp. BSL9

NCBI taxonomy Id: 1442136
Other names: E. sp. BSL-9, Ectothiorhodospira sp. BSL-9

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANB01164.1	ANB01166.1	ECTOBSL9_0213	ECTOBSL9_0215	Restriction endonuclease subunit R; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
ANB01164.1	ANB01171.1	ECTOBSL9_0213	ECTOBSL9_0222	Restriction endonuclease subunit R; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913
ANB01164.1	ANB02393.1	ECTOBSL9_0213	ECTOBSL9_1777	Restriction endonuclease subunit R; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913
ANB01166.1	ANB01164.1	ECTOBSL9_0215	ECTOBSL9_0213	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Restriction endonuclease subunit R; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
ANB01166.1	ANB01171.1	ECTOBSL9_0215	ECTOBSL9_0222	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
ANB01166.1	ANB02059.1	ECTOBSL9_0215	ECTOBSL9_1338	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S24 family.	0.827
ANB01166.1	ANB02392.1	ECTOBSL9_0215	ECTOBSL9_1776	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.831
ANB01166.1	ANB02393.1	ECTOBSL9_0215	ECTOBSL9_1777	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.971
ANB01171.1	ANB01164.1	ECTOBSL9_0222	ECTOBSL9_0213	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Restriction endonuclease subunit R; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913
ANB01171.1	ANB01166.1	ECTOBSL9_0222	ECTOBSL9_0215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
ANB01171.1	ANB02059.1	ECTOBSL9_0222	ECTOBSL9_1338	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S24 family.	0.704
ANB01171.1	ANB02392.1	ECTOBSL9_0222	ECTOBSL9_1776	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
ANB02059.1	ANB01166.1	ECTOBSL9_1338	ECTOBSL9_0215	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S24 family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.827
ANB02059.1	ANB01171.1	ECTOBSL9_1338	ECTOBSL9_0222	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S24 family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.704
ANB02059.1	ANB02393.1	ECTOBSL9_1338	ECTOBSL9_1777	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S24 family.	DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.761
ANB02392.1	ANB01166.1	ECTOBSL9_1776	ECTOBSL9_0215	Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.831
ANB02392.1	ANB01171.1	ECTOBSL9_1776	ECTOBSL9_0222	Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
ANB02392.1	ANB02393.1	ECTOBSL9_1776	ECTOBSL9_1777	Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.954
ANB02393.1	ANB01164.1	ECTOBSL9_1777	ECTOBSL9_0213	DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Restriction endonuclease subunit R; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913
ANB02393.1	ANB01166.1	ECTOBSL9_1777	ECTOBSL9_0215	DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.971