(3 nodes) Outer membrane protein beta-barrel family network (Ectothiorhodospira sp. BSL9)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ANB03940.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (733 aa)
	ANB03286.1	Outer membrane receptor protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (753 aa)
	ANB01943.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (685 aa)

Your Current Organism:

Ectothiorhodospira sp. BSL9

NCBI taxonomy Id: 1442136
Other names: E. sp. BSL-9, Ectothiorhodospira sp. BSL-9

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANB01943.1	ANB03286.1	ECTOBSL9_1188	ECTOBSL9_2903	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Outer membrane receptor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.464
ANB01943.1	ANB03940.1	ECTOBSL9_1188	ECTOBSL9_3014	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.609
ANB03286.1	ANB01943.1	ECTOBSL9_2903	ECTOBSL9_1188	Outer membrane receptor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.464
ANB03940.1	ANB01943.1	ECTOBSL9_3014	ECTOBSL9_1188	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.609