22 items (Fonsecaea pedrosoi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z517_11661	Unplaced genomic scaffold supercont1.8, whole genome shotgun sequence. (654 aa)
	Z517_11062	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence. (660 aa)
	Z517_10098	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence. (1041 aa)
	Z517_07494	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (1049 aa)
	Z517_06722	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (386 aa)
	Z517_04252	Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation. (525 aa)
	Z517_00320	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (431 aa)
	Z517_11829	Unplaced genomic scaffold supercont1.8, whole genome shotgun sequence; Belongs to the peptidase C19 family. (589 aa)
	Z517_12500	Unplaced genomic scaffold supercont1.10, whole genome shotgun sequence. (439 aa)
	Z517_10991	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence. (425 aa)
	Z517_08376	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (966 aa)
	Z517_09686	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence. (381 aa)
	Z517_07683	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (2062 aa)
	Z517_08724	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (737 aa)
	Z517_03029	Ubiquitin carboxyl-terminal hydrolase. (579 aa)
	Z517_03349	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (376 aa)
	Z517_01035	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (988 aa)
	Z517_09795	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence. (317 aa)
	Z517_01739	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (1065 aa)
	Z517_06146	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence; Belongs to the PI3/PI4-kinase family. (3843 aa)
	Z517_04625	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (1086 aa)
	Z517_03534	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (1200 aa)

Your Current Organism:

Fonsecaea pedrosoi

NCBI taxonomy Id: 1442368
Other names: F. pedrosoi CBS 271.37, Fonsecaea pedrosoi CBS 271.37

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Z517_00320	Z517_01035	A0A0D2FE98	A0A0D2GX72	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.633
Z517_00320	Z517_01739	A0A0D2FE98	A0A0D2GZ62	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.504
Z517_00320	Z517_03029	A0A0D2FE98	A0A0D2GS27	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Ubiquitin carboxyl-terminal hydrolase.	0.865
Z517_00320	Z517_03349	A0A0D2FE98	A0A0D2GSY1	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.941
Z517_00320	Z517_03534	A0A0D2FE98	A0A0D2HII2	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.972
Z517_00320	Z517_04252	A0A0D2FE98	A0A0D2F3H1	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation.	0.995
Z517_00320	Z517_04625	A0A0D2FE98	A0A0D2HAM4	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.504
Z517_00320	Z517_06146	A0A0D2FE98	A0A0D2H4K8	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence; Belongs to the PI3/PI4-kinase family.	0.970
Z517_00320	Z517_06722	A0A0D2FE98	A0A0D2F0G8	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	0.978
Z517_00320	Z517_07494	A0A0D2FE98	A0A0D2ETV4	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.504
Z517_00320	Z517_07683	A0A0D2FE98	A0A0D2GGV6	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.756
Z517_00320	Z517_08376	A0A0D2FE98	A0A0D2GCV5	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.504
Z517_00320	Z517_08724	A0A0D2FE98	A0A0D2GK17	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.514
Z517_00320	Z517_09795	A0A0D2FE98	A0A0D2GY96	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence.	0.946
Z517_00320	Z517_10098	A0A0D2FE98	A0A0D2ELU1	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	0.504
Z517_00320	Z517_10991	A0A0D2FE98	A0A0D2GBR7	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	0.706
Z517_00320	Z517_11062	A0A0D2FE98	A0A0D2DF39	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	0.937
Z517_00320	Z517_11661	A0A0D2FE98	A0A0D2DBB8	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.8, whole genome shotgun sequence.	0.973
Z517_00320	Z517_11829	A0A0D2FE98	A0A0D2G2T8	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.8, whole genome shotgun sequence; Belongs to the peptidase C19 family.	0.975
Z517_00320	Z517_12500	A0A0D2FE98	A0A0D2G5S2	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.10, whole genome shotgun sequence.	0.959