46 items (Fonsecaea pedrosoi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z517_11772	Unplaced genomic scaffold supercont1.8, whole genome shotgun sequence. (353 aa)
	Z517_10555	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence. (962 aa)
	Z517_10586	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence. (294 aa)
	Z517_09410	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence. (496 aa)
	Z517_07539	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (487 aa)
	Z517_07959	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (240 aa)
	Z517_08009	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (665 aa)
	Z517_05968	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (483 aa)
	Z517_06183	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (353 aa)
	Z517_06886	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (1453 aa)
	Z517_03357	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (833 aa)
	Z517_03801	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (464 aa)
	Z517_00746	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (1188 aa)
	Z517_10434	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence. (156 aa)
	Z517_10993	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence. (323 aa)
	Z517_08313	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (1004 aa)
	Z517_06039	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (106 aa)
	Z517_04522	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (698 aa)
	Z517_04848	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (544 aa)
	Z517_12283	Unplaced genomic scaffold supercont1.9, whole genome shotgun sequence. (523 aa)
	Z517_11879	Unplaced genomic scaffold supercont1.8, whole genome shotgun sequence. (715 aa)
	Z517_11686	Unplaced genomic scaffold supercont1.8, whole genome shotgun sequence. (1033 aa)
	Z517_09794	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence. (148 aa)
	Z517_09964	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence. (306 aa)
	Z517_10916	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence. (607 aa)
	Z517_09194	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence. (136 aa)
	Z517_06332	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (438 aa)
	Z517_08276	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (449 aa)
	Z517_05650	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence; Belongs to the complex I LYR family. (376 aa)
	Z517_02402	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (317 aa)
	Z517_04470	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (609 aa)
	Z517_10694	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence. (209 aa)
	Z517_09565	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence. (266 aa)
	Z517_02906	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (216 aa)
	Z517_07762	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (261 aa)
	Z517_01117	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (522 aa)
	Z517_01182	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (192 aa)
	Z517_06288	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (509 aa)
	Z517_06454	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (305 aa)
	Z517_01439	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (466 aa)
	Z517_01786	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (199 aa)
	Z517_06979	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (595 aa)
	Z517_07105	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (473 aa)
	Z517_07120	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (145 aa)
	Z517_04354	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (326 aa)
	Z517_02242	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (637 aa)

Your Current Organism:

Fonsecaea pedrosoi

NCBI taxonomy Id: 1442368
Other names: F. pedrosoi CBS 271.37, Fonsecaea pedrosoi CBS 271.37

Send network to Cytoscape

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Z517_01439	Z517_01786	A0A0D2H5C6	A0A0D2H6A8	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.594
Z517_01439	Z517_02906	A0A0D2H5C6	A0A0D2GYF5	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.666
Z517_01439	Z517_04522	A0A0D2H5C6	A0A0D2F4E2	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.705
Z517_01439	Z517_04848	A0A0D2H5C6	A0A0D2F542	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.547
Z517_01439	Z517_05650	A0A0D2H5C6	A0A0D2GNT9	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence; Belongs to the complex I LYR family.	0.547
Z517_01439	Z517_06183	A0A0D2H5C6	A0A0D2DP99	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	0.708
Z517_01439	Z517_06288	A0A0D2H5C6	A0A0D2H4U4	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	0.526
Z517_01439	Z517_09194	A0A0D2H5C6	A0A0D2GDI2	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence.	0.666
Z517_01439	Z517_09410	A0A0D2H5C6	A0A0D2DH19	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence.	0.547
Z517_01439	Z517_09565	A0A0D2H5C6	A0A0D2GXN0	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence.	0.521
Z517_01439	Z517_09964	A0A0D2H5C6	A0A0D2GA70	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence.	0.611
Z517_01439	Z517_10555	A0A0D2H5C6	A0A0D2DDQ9	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	0.822
Z517_01439	Z517_10586	A0A0D2H5C6	A0A0D2DDU2	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	0.768
Z517_01439	Z517_10694	A0A0D2H5C6	A0A0D2GU88	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	0.714
Z517_01439	Z517_12283	A0A0D2H5C6	A0A0D2G0N0	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.9, whole genome shotgun sequence.	0.547
Z517_01786	Z517_01439	A0A0D2H6A8	A0A0D2H5C6	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.594
Z517_01786	Z517_02906	A0A0D2H6A8	A0A0D2GYF5	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.920
Z517_01786	Z517_04470	A0A0D2H6A8	A0A0D2GSD6	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.594
Z517_01786	Z517_05968	A0A0D2H6A8	A0A0D2DNP1	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	0.594
Z517_01786	Z517_06288	A0A0D2H6A8	A0A0D2H4U4	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	0.678