24 items (Fonsecaea pedrosoi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z517_12366	Unplaced genomic scaffold supercont1.9, whole genome shotgun sequence; Belongs to the universal ribosomal protein uL3 family. (436 aa)
	Z517_11571	Unplaced genomic scaffold supercont1.8, whole genome shotgun sequence; Belongs to the universal ribosomal protein uL15 family. (149 aa)
	Z517_11882	Unplaced genomic scaffold supercont1.8, whole genome shotgun sequence. (150 aa)
	Z517_10167	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence. (254 aa)
	Z517_09045	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (316 aa)
	Z517_08921	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence; Belongs to the universal ribosomal protein uS3 family. (264 aa)
	Z517_04516	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (205 aa)
	Z517_05413	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence; Belongs to the universal ribosomal protein uL13 family. (201 aa)
	Z517_11773	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family. (176 aa)
	Z517_10495	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence. (152 aa)
	Z517_08435	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (158 aa)
	Z517_04442	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (130 aa)
	Z517_11932	Unplaced genomic scaffold supercont1.8, whole genome shotgun sequence. (189 aa)
	Z517_08436	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence; Belongs to the universal ribosomal protein uS4 family. (193 aa)
	Z517_08537	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (227 aa)
	Z517_07089	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence; Belongs to the universal ribosomal protein uS5 family. (261 aa)
	Z517_12164	Unplaced genomic scaffold supercont1.9, whole genome shotgun sequence. (300 aa)
	Z517_04591	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence; Belongs to the universal ribosomal protein uL22 family. (188 aa)
	Z517_03818	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence; Belongs to the universal ribosomal protein uL5 family. (175 aa)
	Z517_01447	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (131 aa)
	Z517_08558	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (148 aa)
	Z517_00605	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (225 aa)
	Z517_04419	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (117 aa)
	Z517_05541	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (195 aa)

Your Current Organism:

Fonsecaea pedrosoi

NCBI taxonomy Id: 1442368
Other names: F. pedrosoi CBS 271.37, Fonsecaea pedrosoi CBS 271.37

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Z517_00605	Z517_01447	A0A0D2H2Z1	A0A0D2GYE6	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.999
Z517_00605	Z517_03818	A0A0D2H2Z1	A0A0D2GU95	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence; Belongs to the universal ribosomal protein uL5 family.	0.999
Z517_00605	Z517_04419	A0A0D2H2Z1	A0A0D2HA12	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.999
Z517_00605	Z517_04442	A0A0D2H2Z1	A0A0D2F449	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.999
Z517_00605	Z517_04516	A0A0D2H2Z1	A0A0D2DUQ3	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.999
Z517_00605	Z517_04591	A0A0D2H2Z1	A0A0D2GSP2	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence; Belongs to the universal ribosomal protein uL22 family.	0.999
Z517_00605	Z517_05413	A0A0D2H2Z1	A0A0D2DX39	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence; Belongs to the universal ribosomal protein uL13 family.	0.999
Z517_00605	Z517_05541	A0A0D2H2Z1	A0A0D2HDI7	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.999
Z517_00605	Z517_07089	A0A0D2H2Z1	A0A0D2GI43	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence; Belongs to the universal ribosomal protein uS5 family.	0.999
Z517_00605	Z517_08435	A0A0D2H2Z1	A0A0D2EWM9	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.999
Z517_00605	Z517_08436	A0A0D2H2Z1	A0A0D2GCZ5	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence; Belongs to the universal ribosomal protein uS4 family.	0.999
Z517_00605	Z517_08537	A0A0D2H2Z1	A0A0D2GD71	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.999
Z517_00605	Z517_08558	A0A0D2H2Z1	A0A0D2H238	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.999
Z517_00605	Z517_08921	A0A0D2H2Z1	A0A0D2DN25	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence; Belongs to the universal ribosomal protein uS3 family.	0.999
Z517_00605	Z517_09045	A0A0D2H2Z1	A0A0D2DFZ1	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.999
Z517_00605	Z517_10167	A0A0D2H2Z1	A0A0D2DCQ7	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	0.999
Z517_00605	Z517_10495	A0A0D2H2Z1	A0A0D2EMX3	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	0.999
Z517_00605	Z517_11571	A0A0D2H2Z1	A0A0D2DB14	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.8, whole genome shotgun sequence; Belongs to the universal ribosomal protein uL15 family.	0.999
Z517_00605	Z517_11773	A0A0D2H2Z1	A0A0D2EKT2	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999
Z517_00605	Z517_11882	A0A0D2H2Z1	A0A0D2DBZ0	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.8, whole genome shotgun sequence.	0.999