(6 nodes) Mixed, incl. U3 snoRNA binding, and NUC153 domain network (Fonsecaea pedrosoi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z517_11642	Unplaced genomic scaffold supercont1.8, whole genome shotgun sequence. (894 aa)
	Z517_04948	RNA helicase. (854 aa)
	Z517_10357	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence. (307 aa)
	Z517_04989	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (356 aa)
	Z517_10729	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (757 aa)
	Z517_01850	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (765 aa)

Your Current Organism:

Fonsecaea pedrosoi

NCBI taxonomy Id: 1442368
Other names: F. pedrosoi CBS 271.37, Fonsecaea pedrosoi CBS 271.37

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Z517_01850	Z517_04948	A0A0D2GZI8	A0A0D2F5E9	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	RNA helicase.	0.995
Z517_01850	Z517_04989	A0A0D2GZI8	A0A0D2GM04	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.976
Z517_01850	Z517_10357	A0A0D2GZI8	A0A0D2G9X0	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	0.515
Z517_01850	Z517_10729	A0A0D2GZI8	A0A0D2GUE4	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.781
Z517_01850	Z517_11642	A0A0D2GZI8	A0A0D2EKB3	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.8, whole genome shotgun sequence.	0.973
Z517_04948	Z517_01850	A0A0D2F5E9	A0A0D2GZI8	RNA helicase.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.995
Z517_04948	Z517_04989	A0A0D2F5E9	A0A0D2GM04	RNA helicase.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.983
Z517_04948	Z517_10357	A0A0D2F5E9	A0A0D2G9X0	RNA helicase.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	0.981
Z517_04948	Z517_10729	A0A0D2F5E9	A0A0D2GUE4	RNA helicase.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.807
Z517_04948	Z517_11642	A0A0D2F5E9	A0A0D2EKB3	RNA helicase.	Unplaced genomic scaffold supercont1.8, whole genome shotgun sequence.	0.985
Z517_04989	Z517_01850	A0A0D2GM04	A0A0D2GZI8	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.976
Z517_04989	Z517_04948	A0A0D2GM04	A0A0D2F5E9	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	RNA helicase.	0.983
Z517_04989	Z517_10357	A0A0D2GM04	A0A0D2G9X0	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	0.991
Z517_04989	Z517_10729	A0A0D2GM04	A0A0D2GUE4	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.980
Z517_04989	Z517_11642	A0A0D2GM04	A0A0D2EKB3	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.8, whole genome shotgun sequence.	0.949
Z517_10357	Z517_01850	A0A0D2G9X0	A0A0D2GZI8	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.515
Z517_10357	Z517_04948	A0A0D2G9X0	A0A0D2F5E9	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	RNA helicase.	0.981
Z517_10357	Z517_04989	A0A0D2G9X0	A0A0D2GM04	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.991
Z517_10357	Z517_10729	A0A0D2G9X0	A0A0D2GUE4	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.992
Z517_10357	Z517_11642	A0A0D2G9X0	A0A0D2EKB3	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.8, whole genome shotgun sequence.	0.968