22 items (Fonsecaea pedrosoi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z517_00991	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (127 aa)
	Z517_01241	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (665 aa)
	Z517_06954	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (606 aa)
	Z517_10831	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence. (392 aa)
	YTM1	Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (466 aa)
	Z517_05864	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (351 aa)
	Z517_02692	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (385 aa)
	Z517_01466	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (1230 aa)
	Z517_01698	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (368 aa)
	SPB1	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (834 aa)
	Z517_10539	Protein MAK16; Belongs to the MAK16 family. (325 aa)
	ERB1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (789 aa)
	Z517_05110	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (376 aa)
	Z517_05300	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (475 aa)
	Z517_05385	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (738 aa)
	NOP7	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (676 aa)
	Z517_04520	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (560 aa)
	Z517_10185	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence. (443 aa)
	Z517_01699	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (284 aa)
	Z517_00605	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (225 aa)
	Z517_05866	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (337 aa)
	Z517_01585	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (1793 aa)

Your Current Organism:

Fonsecaea pedrosoi

NCBI taxonomy Id: 1442368
Other names: F. pedrosoi CBS 271.37, Fonsecaea pedrosoi CBS 271.37

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ERB1	NOP7	A0A0D2GJ48	A0A0D2GP97	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.999
ERB1	SPB1	A0A0D2GJ48	A0A0D2FIN1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	0.995
ERB1	YTM1	A0A0D2GJ48	A0A0D2DHM5	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.999
ERB1	Z517_00605	A0A0D2GJ48	A0A0D2H2Z1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.996
ERB1	Z517_00991	A0A0D2GJ48	A0A0D2HMB9	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.948
ERB1	Z517_01241	A0A0D2GJ48	A0A0D2HN30	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.987
ERB1	Z517_01466	A0A0D2GJ48	A0A0D2FHD6	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.784
ERB1	Z517_01585	A0A0D2GJ48	A0A0D2H5P7	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.942
ERB1	Z517_01698	A0A0D2GJ48	A0A0D2FHY3	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.791
ERB1	Z517_01699	A0A0D2GJ48	A0A0D2GZ20	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.793
ERB1	Z517_02692	A0A0D2GJ48	A0A0D2FA13	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.991
ERB1	Z517_04520	A0A0D2GJ48	A0A0D2GSJ4	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.999
ERB1	Z517_05300	A0A0D2GJ48	A0A0D2GMS6	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.	0.774
ERB1	Z517_05385	A0A0D2GJ48	A0A0D2GN11	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.955
ERB1	Z517_05864	A0A0D2GJ48	A0A0D2EYG9	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	0.980
ERB1	Z517_05866	A0A0D2GJ48	A0A0D2H3L8	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	0.987
ERB1	Z517_06954	A0A0D2GJ48	A0A0D2H6N9	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	0.962
ERB1	Z517_10185	A0A0D2GJ48	A0A0D2GSK4	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	0.981
ERB1	Z517_10539	A0A0D2GJ48	A0A0D2GAC5	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Protein MAK16; Belongs to the MAK16 family.	0.973
NOP7	ERB1	A0A0D2GP97	A0A0D2GJ48	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.999