(15 nodes) Pseudouridine synthesis network (Fonsecaea pedrosoi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z517_01448	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (563 aa)
	TSR3	Ribosome biogenesis protein TSR3; Ribosome biogenesis protein required for processing 35S pre- rRNA at site D; Belongs to the TSR3 family. (396 aa)
	Z517_10861	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence. (483 aa)
	Z517_08675	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (653 aa)
	Z517_10374	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence. (467 aa)
	Z517_09116	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence. (303 aa)
	Z517_08263	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (791 aa)
	Z517_06572	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (64 aa)
	Z517_11518	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (165 aa)
	Z517_11676	Unplaced genomic scaffold supercont1.8, whole genome shotgun sequence. (791 aa)
	Z517_10115	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence. (228 aa)
	Z517_03299	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (663 aa)
	Z517_00251	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (812 aa)
	Z517_01397	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (430 aa)
	Z517_03205	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (753 aa)

Your Current Organism:

Fonsecaea pedrosoi

NCBI taxonomy Id: 1442368
Other names: F. pedrosoi CBS 271.37, Fonsecaea pedrosoi CBS 271.37

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Z517_00251	Z517_01397	A0A0D2GV50	A0A0D2GYB3	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.626
Z517_00251	Z517_01448	A0A0D2GV50	A0A0D2HNN4	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.831
Z517_00251	Z517_03299	A0A0D2GV50	A0A0D2GSU8	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.689
Z517_00251	Z517_08675	A0A0D2GV50	A0A0D2DMA8	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.671
Z517_00251	Z517_09116	A0A0D2GV50	A0A0D2EQV7	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence.	0.713
Z517_00251	Z517_10115	A0A0D2GV50	A0A0D2GSC8	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	0.689
Z517_00251	Z517_10861	A0A0D2GV50	A0A0D2DEM4	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	0.703
Z517_01397	Z517_00251	A0A0D2GYB3	A0A0D2GV50	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.626
Z517_01397	Z517_01448	A0A0D2GYB3	A0A0D2HNN4	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.600
Z517_01397	Z517_03205	A0A0D2GYB3	A0A0D2HHQ6	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.917
Z517_01397	Z517_03299	A0A0D2GYB3	A0A0D2GSU8	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.826
Z517_01397	Z517_06572	A0A0D2GYB3	A0A0D2F046	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	0.917
Z517_01397	Z517_08675	A0A0D2GYB3	A0A0D2DMA8	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.908
Z517_01397	Z517_09116	A0A0D2GYB3	A0A0D2EQV7	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence.	0.993
Z517_01397	Z517_10115	A0A0D2GYB3	A0A0D2GSC8	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	0.826
Z517_01397	Z517_10374	A0A0D2GYB3	A0A0D2EML1	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	0.916
Z517_01397	Z517_10861	A0A0D2GYB3	A0A0D2DEM4	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	0.412
Z517_01397	Z517_11518	A0A0D2GYB3	A0A0D2G1R3	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.988
Z517_01397	Z517_11676	A0A0D2GYB3	A0A0D2G851	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.8, whole genome shotgun sequence.	0.916
Z517_01448	Z517_00251	A0A0D2HNN4	A0A0D2GV50	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.831