8 items (Fonsecaea pedrosoi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z517_05963	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (280 aa)
	Z517_05404	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (196 aa)
	Z517_02676	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (520 aa)
	Z517_05398	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (107 aa)
	Z517_07593	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (327 aa)
	Z517_07633	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (415 aa)
	Z517_03897	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (543 aa)
	Z517_11456	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (522 aa)

Your Current Organism:

Fonsecaea pedrosoi

NCBI taxonomy Id: 1442368
Other names: F. pedrosoi CBS 271.37, Fonsecaea pedrosoi CBS 271.37

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Z517_03897	Z517_05398	A0A0D2H8D0	A0A0D2DX19	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.581
Z517_03897	Z517_05963	A0A0D2H8D0	A0A0D2DNN5	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	0.483
Z517_03897	Z517_07593	A0A0D2H8D0	A0A0D2GGL0	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.556
Z517_03897	Z517_07633	A0A0D2H8D0	A0A0D2GGP8	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.556
Z517_05398	Z517_03897	A0A0D2DX19	A0A0D2H8D0	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.581
Z517_05398	Z517_05963	A0A0D2DX19	A0A0D2DNN5	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	0.579
Z517_05963	Z517_03897	A0A0D2DNN5	A0A0D2H8D0	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.483
Z517_05963	Z517_05398	A0A0D2DNN5	A0A0D2DX19	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.579
Z517_07593	Z517_03897	A0A0D2GGL0	A0A0D2H8D0	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.556
Z517_07633	Z517_03897	A0A0D2GGP8	A0A0D2H8D0	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.556