STRINGSTRING
Z517_04245 Z517_04245 Z517_08202 Z517_08202 Z517_05700 Z517_05700 Z517_03819 Z517_03819 Z517_10569 Z517_10569 Z517_05168 Z517_05168
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Z517_04245Small nuclear ribonucleoprotein G. (80 aa)
Z517_08202Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (123 aa)
Z517_05700Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (607 aa)
Z517_03819Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (218 aa)
Z517_10569Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence. (93 aa)
Z517_05168Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (94 aa)
Your Current Organism:
Fonsecaea pedrosoi
NCBI taxonomy Id: 1442368
Other names: F. pedrosoi CBS 271.37, Fonsecaea pedrosoi CBS 271.37
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