9 items (Fonsecaea pedrosoi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z517_05588	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (456 aa)
	Z517_10247	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (525 aa)
	Z517_05023	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (231 aa)
	Z517_02100	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (604 aa)
	Z517_12498	Unplaced genomic scaffold supercont1.10, whole genome shotgun sequence. (281 aa)
	Z517_11246	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (476 aa)
	Z517_08654	3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate. (341 aa)
	Z517_03623	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (248 aa)
	Z517_04087	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family. (499 aa)

Your Current Organism:

Fonsecaea pedrosoi

NCBI taxonomy Id: 1442368
Other names: F. pedrosoi CBS 271.37, Fonsecaea pedrosoi CBS 271.37

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Z517_02100	Z517_03623	A0A0D2F8E2	A0A0D2GTN5	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.980
Z517_02100	Z517_04087	A0A0D2F8E2	A0A0D2H930	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.	0.897
Z517_02100	Z517_05588	A0A0D2F8E2	A0A0D2DXR6	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.822
Z517_02100	Z517_10247	A0A0D2F8E2	A0A0D2DD25	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.970
Z517_02100	Z517_11246	A0A0D2F8E2	A0A0D2GCX3	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.970
Z517_02100	Z517_12498	A0A0D2F8E2	A0A0D2FZX6	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.10, whole genome shotgun sequence.	0.965
Z517_03623	Z517_02100	A0A0D2GTN5	A0A0D2F8E2	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.980
Z517_03623	Z517_04087	A0A0D2GTN5	A0A0D2H930	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.	0.848
Z517_03623	Z517_05588	A0A0D2GTN5	A0A0D2DXR6	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.871
Z517_03623	Z517_10247	A0A0D2GTN5	A0A0D2DD25	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.921
Z517_03623	Z517_11246	A0A0D2GTN5	A0A0D2GCX3	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.921
Z517_04087	Z517_02100	A0A0D2H930	A0A0D2F8E2	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.897
Z517_04087	Z517_03623	A0A0D2H930	A0A0D2GTN5	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.848
Z517_04087	Z517_05588	A0A0D2H930	A0A0D2DXR6	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.812
Z517_04087	Z517_10247	A0A0D2H930	A0A0D2DD25	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.950
Z517_04087	Z517_11246	A0A0D2H930	A0A0D2GCX3	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.954
Z517_04087	Z517_12498	A0A0D2H930	A0A0D2FZX6	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.	Unplaced genomic scaffold supercont1.10, whole genome shotgun sequence.	0.847
Z517_05588	Z517_02100	A0A0D2DXR6	A0A0D2F8E2	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.822
Z517_05588	Z517_03623	A0A0D2DXR6	A0A0D2GTN5	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.871
Z517_05588	Z517_04087	A0A0D2DXR6	A0A0D2H930	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.	0.812