(13 nodes) Preribosome, small subunit precursor network (Fonsecaea pedrosoi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z517_12477	Unplaced genomic scaffold supercont1.10, whole genome shotgun sequence. (294 aa)
	Z517_09445	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence. (2591 aa)
	Z517_09772	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence. (559 aa)
	Z517_08921	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence; Belongs to the universal ribosomal protein uS3 family. (264 aa)
	Z517_03900	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (336 aa)
	Z517_06573	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (444 aa)
	Z517_12514	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (395 aa)
	Z517_12209	Unplaced genomic scaffold supercont1.9, whole genome shotgun sequence. (835 aa)
	Z517_10759	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence. (473 aa)
	Z517_00532	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (532 aa)
	Z517_05681	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (241 aa)
	Z517_02834	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (902 aa)
	Z517_01493	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (383 aa)

Your Current Organism:

Fonsecaea pedrosoi

NCBI taxonomy Id: 1442368
Other names: F. pedrosoi CBS 271.37, Fonsecaea pedrosoi CBS 271.37

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Z517_00532	Z517_01493	A0A0D2GVZ0	A0A0D2HNR3	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.994
Z517_00532	Z517_02834	A0A0D2GVZ0	A0A0D2HGN8	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.998
Z517_00532	Z517_03900	A0A0D2GVZ0	A0A0D2F2L7	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.998
Z517_00532	Z517_05681	A0A0D2GVZ0	A0A0D2HDU6	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.862
Z517_00532	Z517_06573	A0A0D2GVZ0	A0A0D2GGP9	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.	0.999
Z517_00532	Z517_08921	A0A0D2GVZ0	A0A0D2DN25	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence; Belongs to the universal ribosomal protein uS3 family.	0.995
Z517_00532	Z517_09445	A0A0D2GVZ0	A0A0D2DH59	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence.	0.994
Z517_00532	Z517_09772	A0A0D2GVZ0	A0A0D2DI01	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence.	0.998
Z517_00532	Z517_10759	A0A0D2GVZ0	A0A0D2GUJ7	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	0.999
Z517_00532	Z517_12209	A0A0D2GVZ0	A0A0D2GPC5	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.9, whole genome shotgun sequence.	0.999
Z517_00532	Z517_12477	A0A0D2GVZ0	A0A0D2EI99	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.10, whole genome shotgun sequence.	0.998
Z517_00532	Z517_12514	A0A0D2GVZ0	A0A0D2GNY1	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.998
Z517_01493	Z517_00532	A0A0D2HNR3	A0A0D2GVZ0	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.994
Z517_01493	Z517_02834	A0A0D2HNR3	A0A0D2HGN8	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.824
Z517_01493	Z517_03900	A0A0D2HNR3	A0A0D2F2L7	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.994
Z517_01493	Z517_05681	A0A0D2HNR3	A0A0D2HDU6	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.635
Z517_01493	Z517_06573	A0A0D2HNR3	A0A0D2GGP9	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family.	0.999
Z517_01493	Z517_08921	A0A0D2HNR3	A0A0D2DN25	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence; Belongs to the universal ribosomal protein uS3 family.	0.995
Z517_01493	Z517_09772	A0A0D2HNR3	A0A0D2DI01	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence.	0.489
Z517_01493	Z517_10759	A0A0D2HNR3	A0A0D2GUJ7	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	0.999