18 items (Fonsecaea pedrosoi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z517_01497	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence; Belongs to the cullin family. (907 aa)
	Z517_09375	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence. (107 aa)
	Z517_08434	RNA-dependent RNA polymerase. (1411 aa)
	Z517_04880	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (563 aa)
	Z517_04236	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (675 aa)
	Z517_05283	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (664 aa)
	Z517_02927	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (1077 aa)
	Z517_11063	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence. (1229 aa)
	Z517_02923	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (1650 aa)
	Z517_00185	RNA-dependent RNA polymerase. (1173 aa)
	Z517_00562	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (855 aa)
	Z517_09789	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence. (784 aa)
	Z517_08564	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (1727 aa)
	Z517_00066	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (618 aa)
	Z517_09995	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence. (927 aa)
	Z517_02520	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (702 aa)
	Z517_09790	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence. (261 aa)
	Z517_02926	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (518 aa)

Your Current Organism:

Fonsecaea pedrosoi

NCBI taxonomy Id: 1442368
Other names: F. pedrosoi CBS 271.37, Fonsecaea pedrosoi CBS 271.37

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Z517_00185	Z517_02923	A0A0D2FDV0	A0A0D2FAJ1	RNA-dependent RNA polymerase.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.416
Z517_00185	Z517_11063	A0A0D2FDV0	A0A0D2EPM3	RNA-dependent RNA polymerase.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	0.416
Z517_02923	Z517_00185	A0A0D2FAJ1	A0A0D2FDV0	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	RNA-dependent RNA polymerase.	0.416
Z517_02923	Z517_08434	A0A0D2FAJ1	A0A0D2DLS0	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	RNA-dependent RNA polymerase.	0.416
Z517_02923	Z517_08564	A0A0D2FAJ1	A0A0D2GJG8	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.416
Z517_08434	Z517_02923	A0A0D2DLS0	A0A0D2FAJ1	RNA-dependent RNA polymerase.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.416
Z517_08434	Z517_11063	A0A0D2DLS0	A0A0D2EPM3	RNA-dependent RNA polymerase.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	0.416
Z517_08564	Z517_02923	A0A0D2GJG8	A0A0D2FAJ1	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.416
Z517_08564	Z517_11063	A0A0D2GJG8	A0A0D2EPM3	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	0.416
Z517_11063	Z517_00185	A0A0D2EPM3	A0A0D2FDV0	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	RNA-dependent RNA polymerase.	0.416
Z517_11063	Z517_08434	A0A0D2EPM3	A0A0D2DLS0	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	RNA-dependent RNA polymerase.	0.416
Z517_11063	Z517_08564	A0A0D2EPM3	A0A0D2GJG8	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.416