28 items (Fonsecaea pedrosoi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z517_02496	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (829 aa)
	Z517_02501	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (743 aa)
	Z517_09061	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence. (412 aa)
	Z517_09883	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence. (420 aa)
	Z517_04312	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (363 aa)
	Z517_08143	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (878 aa)
	Z517_12486	Unplaced genomic scaffold supercont1.10, whole genome shotgun sequence; Belongs to the heat shock protein 70 family. (684 aa)
	Z517_10606	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence. (424 aa)
	Z517_06473	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (182 aa)
	Z517_08545	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (527 aa)
	Z517_04366	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (583 aa)
	Z517_01231	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (350 aa)
	Z517_03679	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (397 aa)
	Z517_02759	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (1344 aa)
	Z517_03897	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (543 aa)
	Z517_07260	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (894 aa)
	Z517_01811	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (849 aa)
	Z517_01573	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (206 aa)
	Z517_05642	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence; Belongs to the heat shock protein 70 family. (583 aa)
	Z517_11609	Unplaced genomic scaffold supercont1.8, whole genome shotgun sequence. (447 aa)
	Z517_07407	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (403 aa)
	Z517_12374	Unplaced genomic scaffold supercont1.9, whole genome shotgun sequence; Belongs to the heat shock protein 70 family. (678 aa)
	Z517_06470	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (734 aa)
	Z517_04769	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (316 aa)
	Z517_07174	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (222 aa)
	Z517_07633	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (415 aa)
	Z517_07593	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (327 aa)
	Z517_04947	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (212 aa)

Your Current Organism:

Fonsecaea pedrosoi

NCBI taxonomy Id: 1442368
Other names: F. pedrosoi CBS 271.37, Fonsecaea pedrosoi CBS 271.37

Send network to Cytoscape

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Z517_01231	Z517_02496	A0A0D2HN20	A0A0D2DZL1	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.497
Z517_01231	Z517_02501	A0A0D2HN20	A0A0D2DZL9	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.497
Z517_01231	Z517_03679	A0A0D2HN20	A0A0D2HJ22	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.497
Z517_01231	Z517_04312	A0A0D2HN20	A0A0D2F3M4	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.497
Z517_01231	Z517_04366	A0A0D2HN20	A0A0D2DU80	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.619
Z517_01231	Z517_05642	A0A0D2HN20	A0A0D2GVI9	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence; Belongs to the heat shock protein 70 family.	0.798
Z517_01231	Z517_09061	A0A0D2HN20	A0A0D2EQP3	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence.	0.819
Z517_01231	Z517_09883	A0A0D2HN20	A0A0D2ET79	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence.	0.565
Z517_01231	Z517_10606	A0A0D2HN20	A0A0D2DDW7	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	0.825
Z517_01231	Z517_11609	A0A0D2HN20	A0A0D2GQX1	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.8, whole genome shotgun sequence.	0.479
Z517_01231	Z517_12374	A0A0D2HN20	A0A0D2GPW2	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.9, whole genome shotgun sequence; Belongs to the heat shock protein 70 family.	0.831
Z517_01231	Z517_12486	A0A0D2HN20	A0A0D2D945	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.10, whole genome shotgun sequence; Belongs to the heat shock protein 70 family.	0.838
Z517_01573	Z517_04366	A0A0D2GYP1	A0A0D2DU80	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.965
Z517_01573	Z517_05642	A0A0D2GYP1	A0A0D2GVI9	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence; Belongs to the heat shock protein 70 family.	0.788
Z517_01573	Z517_07407	A0A0D2GYP1	A0A0D2GQD5	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	0.728
Z517_01573	Z517_07593	A0A0D2GYP1	A0A0D2GGL0	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.817
Z517_01573	Z517_07633	A0A0D2GYP1	A0A0D2GGP8	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.817
Z517_01573	Z517_08545	A0A0D2GYP1	A0A0D2DM03	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.669
Z517_01573	Z517_12374	A0A0D2GYP1	A0A0D2GPW2	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.9, whole genome shotgun sequence; Belongs to the heat shock protein 70 family.	0.677
Z517_01573	Z517_12486	A0A0D2GYP1	A0A0D2D945	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.10, whole genome shotgun sequence; Belongs to the heat shock protein 70 family.	0.838