(9 nodes) Box C/D RNA processing network (Fonsecaea pedrosoi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z517_10980	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence. (1136 aa)
	Z517_04552	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (254 aa)
	Z517_05303	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (244 aa)
	Z517_08611	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (109 aa)
	Z517_11927	Unplaced genomic scaffold supercont1.8, whole genome shotgun sequence. (568 aa)
	Z517_07395	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (299 aa)
	Z517_01111	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (319 aa)
	Z517_03319	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (648 aa)
	Z517_06879	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (260 aa)

Your Current Organism:

Fonsecaea pedrosoi

NCBI taxonomy Id: 1442368
Other names: F. pedrosoi CBS 271.37, Fonsecaea pedrosoi CBS 271.37

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Z517_01111	Z517_05303	A0A0D2HMM9	A0A0D2DWN6	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.998
Z517_01111	Z517_08611	A0A0D2HMM9	A0A0D2EX54	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.990
Z517_01111	Z517_10980	A0A0D2HMM9	A0A0D2GV20	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	0.998
Z517_03319	Z517_04552	A0A0D2GSW0	A0A0D2DUT2	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.999
Z517_03319	Z517_08611	A0A0D2GSW0	A0A0D2EX54	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.498
Z517_04552	Z517_03319	A0A0D2DUT2	A0A0D2GSW0	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.999
Z517_04552	Z517_07395	A0A0D2DUT2	A0A0D2GIY0	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	0.411
Z517_05303	Z517_01111	A0A0D2DWN6	A0A0D2HMM9	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.998
Z517_05303	Z517_06879	A0A0D2DWN6	A0A0D2H6G1	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	0.973
Z517_05303	Z517_08611	A0A0D2DWN6	A0A0D2EX54	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.991
Z517_05303	Z517_10980	A0A0D2DWN6	A0A0D2GV20	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	0.998
Z517_06879	Z517_05303	A0A0D2H6G1	A0A0D2DWN6	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.973
Z517_06879	Z517_08611	A0A0D2H6G1	A0A0D2EX54	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.853
Z517_06879	Z517_10980	A0A0D2H6G1	A0A0D2GV20	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	0.977
Z517_07395	Z517_04552	A0A0D2GIY0	A0A0D2DUT2	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.411
Z517_08611	Z517_01111	A0A0D2EX54	A0A0D2HMM9	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.990
Z517_08611	Z517_03319	A0A0D2EX54	A0A0D2GSW0	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.498
Z517_08611	Z517_05303	A0A0D2EX54	A0A0D2DWN6	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.991
Z517_08611	Z517_06879	A0A0D2EX54	A0A0D2H6G1	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	0.853
Z517_08611	Z517_10980	A0A0D2EX54	A0A0D2GV20	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	0.992