25 items (Fonsecaea pedrosoi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z517_07321	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (595 aa)
	Z517_12511	Unplaced genomic scaffold supercont1.10, whole genome shotgun sequence. (982 aa)
	Z517_10932	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence. (272 aa)
	Z517_09055	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence. (666 aa)
	Z517_05168	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (94 aa)
	Z517_08202	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (123 aa)
	Z517_02637	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
	Z517_03118	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (982 aa)
	Z517_01461	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family. (143 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (140 aa)
	Z517_07264	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (218 aa)
	Z517_04418	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (2556 aa)
	Z517_04829	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (126 aa)
	Z517_05700	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (607 aa)
	Z517_02321	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (95 aa)
	Z517_04245	Small nuclear ribonucleoprotein G. (80 aa)
	Z517_10569	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence. (93 aa)
	Z517_02575	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (503 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (85 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	Z517_03922	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (2243 aa)
	Z517_04359	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (135 aa)
	Z517_03819	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (218 aa)
	Z517_00377	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (388 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)

Your Current Organism:

Fonsecaea pedrosoi

NCBI taxonomy Id: 1442368
Other names: F. pedrosoi CBS 271.37, Fonsecaea pedrosoi CBS 271.37

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM3	LSM4	A0A0D2HNN9	A0A0D2G0H6	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.998
LSM3	LSM5	A0A0D2HNN9	A0A0D2H0C3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
LSM3	LSM8	A0A0D2HNN9	A0A0D2H4F9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.998
LSM3	Z517_01461	A0A0D2HNN9	A0A0D2FHD4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.	0.971
LSM3	Z517_02321	A0A0D2HNN9	A0A0D2GQ34	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.998
LSM3	Z517_02575	A0A0D2HNN9	A0A0D2GXG5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.987
LSM3	Z517_02637	A0A0D2HNN9	A0A0D2F9U1	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	Z517_03118	A0A0D2HNN9	A0A0D2FB79	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.987
LSM3	Z517_03819	A0A0D2HNN9	A0A0D2HJF7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.938
LSM3	Z517_03922	A0A0D2HNN9	A0A0D2H8F9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.984
LSM3	Z517_04245	A0A0D2HNN9	A0A0D2GRL4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein G.	0.991
LSM3	Z517_04359	A0A0D2HNN9	A0A0D2H9T7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.998
LSM3	Z517_04418	A0A0D2HNN9	A0A0D2GKK4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.988
LSM3	Z517_04829	A0A0D2HNN9	A0A0D2GLH8	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.960
LSM3	Z517_05168	A0A0D2HNN9	A0A0D2DWE3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.994
LSM3	Z517_05700	A0A0D2HNN9	A0A0D2GNY2	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.992
LSM3	Z517_07264	A0A0D2HNN9	A0A0D2GIM7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	0.952
LSM3	Z517_07321	A0A0D2HNN9	A0A0D2GQ48	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	0.992
LSM3	Z517_08202	A0A0D2HNN9	A0A0D2EVV7	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.992
LSM3	Z517_09055	A0A0D2HNN9	A0A0D2DG05	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence.	0.989