10 items (Fonsecaea pedrosoi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z517_05556	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence; Belongs to the ClpA/ClpB family. (786 aa)
	Z517_09375	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence. (107 aa)
	Z517_08545	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (527 aa)
	Z517_01436	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (411 aa)
	Z517_07841	Mitochondrial intermediate peptidase. (793 aa)
	Z517_09916	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence; Belongs to the band 7/mec-2 family. Flotillin subfamily. (494 aa)
	Z517_02520	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (702 aa)
	Z517_00509	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (467 aa)
	Z517_01222	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (700 aa)
	Z517_06894	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (192 aa)

Your Current Organism:

Fonsecaea pedrosoi

NCBI taxonomy Id: 1442368
Other names: F. pedrosoi CBS 271.37, Fonsecaea pedrosoi CBS 271.37

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Z517_00509	Z517_02520	A0A0D2H2Q3	A0A0D2GXA8	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.999
Z517_00509	Z517_08545	A0A0D2H2Q3	A0A0D2DM03	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.886
Z517_00509	Z517_09375	A0A0D2H2Q3	A0A0D2DGX5	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence.	0.999
Z517_02520	Z517_00509	A0A0D2GXA8	A0A0D2H2Q3	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.999
Z517_02520	Z517_05556	A0A0D2GXA8	A0A0D2HDJ9	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence; Belongs to the ClpA/ClpB family.	0.806
Z517_02520	Z517_07841	A0A0D2GXA8	A0A0D2GBM9	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	Mitochondrial intermediate peptidase.	0.501
Z517_02520	Z517_08545	A0A0D2GXA8	A0A0D2DM03	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.977
Z517_05556	Z517_02520	A0A0D2HDJ9	A0A0D2GXA8	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence; Belongs to the ClpA/ClpB family.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.806
Z517_05556	Z517_09375	A0A0D2HDJ9	A0A0D2DGX5	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence; Belongs to the ClpA/ClpB family.	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence.	0.806
Z517_07841	Z517_02520	A0A0D2GBM9	A0A0D2GXA8	Mitochondrial intermediate peptidase.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.501
Z517_07841	Z517_09375	A0A0D2GBM9	A0A0D2DGX5	Mitochondrial intermediate peptidase.	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence.	0.501
Z517_08545	Z517_00509	A0A0D2DM03	A0A0D2H2Q3	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.886
Z517_08545	Z517_02520	A0A0D2DM03	A0A0D2GXA8	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.977
Z517_08545	Z517_09375	A0A0D2DM03	A0A0D2DGX5	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence.	0.977
Z517_09375	Z517_00509	A0A0D2DGX5	A0A0D2H2Q3	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.999
Z517_09375	Z517_05556	A0A0D2DGX5	A0A0D2HDJ9	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence; Belongs to the ClpA/ClpB family.	0.806
Z517_09375	Z517_07841	A0A0D2DGX5	A0A0D2GBM9	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence.	Mitochondrial intermediate peptidase.	0.501
Z517_09375	Z517_08545	A0A0D2DGX5	A0A0D2DM03	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.977