7 items (Fonsecaea pedrosoi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z517_04366	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (583 aa)
	Z517_07633	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (415 aa)
	Z517_07407	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (403 aa)
	Z517_01573	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (206 aa)
	Z517_01811	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (849 aa)
	Z517_02759	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (1344 aa)
	Z517_07593	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (327 aa)

Your Current Organism:

Fonsecaea pedrosoi

NCBI taxonomy Id: 1442368
Other names: F. pedrosoi CBS 271.37, Fonsecaea pedrosoi CBS 271.37

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Z517_01573	Z517_04366	A0A0D2GYP1	A0A0D2DU80	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.965
Z517_01573	Z517_07407	A0A0D2GYP1	A0A0D2GQD5	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	0.728
Z517_01573	Z517_07593	A0A0D2GYP1	A0A0D2GGL0	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.817
Z517_01573	Z517_07633	A0A0D2GYP1	A0A0D2GGP8	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.817
Z517_04366	Z517_01573	A0A0D2DU80	A0A0D2GYP1	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.965
Z517_04366	Z517_07407	A0A0D2DU80	A0A0D2GQD5	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	0.553
Z517_04366	Z517_07593	A0A0D2DU80	A0A0D2GGL0	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.926
Z517_04366	Z517_07633	A0A0D2DU80	A0A0D2GGP8	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.926
Z517_07407	Z517_01573	A0A0D2GQD5	A0A0D2GYP1	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.728
Z517_07407	Z517_04366	A0A0D2GQD5	A0A0D2DU80	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.553
Z517_07593	Z517_01573	A0A0D2GGL0	A0A0D2GYP1	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.817
Z517_07593	Z517_04366	A0A0D2GGL0	A0A0D2DU80	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.926
Z517_07633	Z517_01573	A0A0D2GGP8	A0A0D2GYP1	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.817
Z517_07633	Z517_04366	A0A0D2GGP8	A0A0D2DU80	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.926