(36 nodes) 90S preribosome network (Fonsecaea pedrosoi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z517_11742	U3 small nucleolar RNA-associated protein 22. (1141 aa)
	Z517_09045	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (316 aa)
	Z517_08981	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence; Belongs to the DEAD box helicase family. (528 aa)
	Z517_06229	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (703 aa)
	Z517_03696	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (714 aa)
	Z517_00958	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (691 aa)
	Z517_12477	Unplaced genomic scaffold supercont1.10, whole genome shotgun sequence. (294 aa)
	Z517_09026	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence. (564 aa)
	Z517_08872	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (311 aa)
	Z517_05794	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (296 aa)
	Z517_06752	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (725 aa)
	Z517_04788	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (1218 aa)
	Z517_05274	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (1068 aa)
	Z517_12213	Unplaced genomic scaffold supercont1.9, whole genome shotgun sequence. (934 aa)
	Z517_10683	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence; Belongs to the universal ribosomal protein uS12 family. (146 aa)
	Z517_11525	Unplaced genomic scaffold supercont1.8, whole genome shotgun sequence. (394 aa)
	Z517_10357	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence. (307 aa)
	Z517_08335	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (767 aa)
	Z517_09961	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence. (188 aa)
	Z517_03916	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (407 aa)
	Z517_04031	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family. (534 aa)
	Z517_06950	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (599 aa)
	Z517_12008	RNA helicase. (623 aa)
	Z517_00693	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (972 aa)
	Z517_03409	RNA helicase. (636 aa)
	Z517_00033	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (304 aa)
	Z517_08979	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (280 aa)
	Z517_00957	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (487 aa)
	Z517_04595	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (676 aa)
	Z517_02834	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (902 aa)
	NAT10	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1116 aa)
	Z517_00262	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (707 aa)
	Z517_00589	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (1022 aa)
	Z517_01141	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (725 aa)
	Z517_01206	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (697 aa)
	Z517_01241	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (665 aa)

Your Current Organism:

Fonsecaea pedrosoi

NCBI taxonomy Id: 1442368
Other names: F. pedrosoi CBS 271.37, Fonsecaea pedrosoi CBS 271.37

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NAT10	Z517_00033	A0A0D2HHL4	A0A0D2H190	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.992
NAT10	Z517_00262	A0A0D2HHL4	A0A0D2HK47	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.930
NAT10	Z517_00589	A0A0D2HHL4	A0A0D2HL30	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.997
NAT10	Z517_00693	A0A0D2HHL4	A0A0D2GWB5	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.992
NAT10	Z517_01141	A0A0D2HHL4	A0A0D2HMR7	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.986
NAT10	Z517_01241	A0A0D2HHL4	A0A0D2HN30	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.887
NAT10	Z517_02834	A0A0D2HHL4	A0A0D2HGN8	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.998
NAT10	Z517_03409	A0A0D2HHL4	A0A0D2GZV9	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	RNA helicase.	0.808
NAT10	Z517_03916	A0A0D2HHL4	A0A0D2GJ99	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.988
NAT10	Z517_04031	A0A0D2HHL4	A0A0D2GJS3	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family.	0.685
NAT10	Z517_04595	A0A0D2HHL4	A0A0D2HAK6	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.887
NAT10	Z517_05274	A0A0D2HHL4	A0A0D2F6E1	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.895
NAT10	Z517_05794	A0A0D2HHL4	A0A0D2EYB6	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	0.995
NAT10	Z517_06752	A0A0D2HHL4	A0A0D2F0J2	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	0.998
NAT10	Z517_06950	A0A0D2HHL4	A0A0D2GP62	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	0.994
NAT10	Z517_08872	A0A0D2HHL4	A0A0D2EXY4	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.609
NAT10	Z517_08981	A0A0D2HHL4	A0A0D2DN63	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence; Belongs to the DEAD box helicase family.	0.807
NAT10	Z517_09026	A0A0D2HHL4	A0A0D2EQK5	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence.	0.997
NAT10	Z517_09045	A0A0D2HHL4	A0A0D2DFZ1	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.584
NAT10	Z517_09961	A0A0D2HHL4	A0A0D2GG51	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence.	0.945