12 items (Fonsecaea pedrosoi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z517_05453	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence; Belongs to the small heat shock protein (HSP20) family. (235 aa)
	Z517_03756	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence; Belongs to the small heat shock protein (HSP20) family. (224 aa)
	Z517_03113	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence; Belongs to the small heat shock protein (HSP20) family. (152 aa)
	Z517_00120	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence; Belongs to the small heat shock protein (HSP20) family. (540 aa)
	Z517_06137	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence; Belongs to the small heat shock protein (HSP20) family. (285 aa)
	Z517_03114	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence; Belongs to the small heat shock protein (HSP20) family. (168 aa)
	Z517_03452	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (194 aa)
	Z517_01040	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence; Belongs to the small heat shock protein (HSP20) family. (232 aa)
	Z517_01573	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (206 aa)
	Z517_00509	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (467 aa)
	Z517_05451	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence; Belongs to the small heat shock protein (HSP20) family. (189 aa)
	Z517_00986	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (338 aa)

Your Current Organism:

Fonsecaea pedrosoi

NCBI taxonomy Id: 1442368
Other names: F. pedrosoi CBS 271.37, Fonsecaea pedrosoi CBS 271.37

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Z517_00509	Z517_00986	A0A0D2H2Q3	A0A0D2HMB4	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.998
Z517_00509	Z517_01573	A0A0D2H2Q3	A0A0D2GYP1	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.970
Z517_00986	Z517_00509	A0A0D2HMB4	A0A0D2H2Q3	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.998
Z517_01573	Z517_00509	A0A0D2GYP1	A0A0D2H2Q3	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.970
Z517_01573	Z517_03452	A0A0D2GYP1	A0A0D2GT67	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.554
Z517_03452	Z517_01573	A0A0D2GT67	A0A0D2GYP1	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.554