(27 nodes) Resolution of Sister Chromatid Cohesion network (Fonsecaea pedrosoi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z517_01441	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (457 aa)
	Z517_08750	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (956 aa)
	Z517_06941	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (603 aa)
	Z517_04411	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1032 aa)
	Z517_05728	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (1261 aa)
	Z517_03322	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (269 aa)
	Z517_10284	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence. (312 aa)
	Z517_09633	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence. (838 aa)
	Z517_05839	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (658 aa)
	Z517_04005	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (859 aa)
	Z517_05229	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (795 aa)
	Z517_03223	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (765 aa)
	Z517_10270	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence. (712 aa)
	Z517_10320	Structural maintenance of chromosomes protein. (1266 aa)
	Z517_11219	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence. (309 aa)
	Z517_10665	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence. (617 aa)
	Z517_04368	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (504 aa)
	Z517_07191	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (757 aa)
	Z517_05347	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (1221 aa)
	Z517_09003	Structural maintenance of chromosomes protein. (1207 aa)
	Z517_00723	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (277 aa)
	Z517_09293	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence. (136 aa)
	Z517_07552	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (247 aa)
	Z517_00128	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (1534 aa)
	Z517_05996	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (425 aa)
	Z517_06754	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (623 aa)
	Z517_02594	Serine/threonine-protein kinase. (1071 aa)

Your Current Organism:

Fonsecaea pedrosoi

NCBI taxonomy Id: 1442368
Other names: F. pedrosoi CBS 271.37, Fonsecaea pedrosoi CBS 271.37

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Z517_00128	Z517_02594	A0A0D2H1H5	A0A0D2HFY2	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Serine/threonine-protein kinase.	0.790
Z517_00128	Z517_03322	A0A0D2H1H5	A0A0D2E216	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.958
Z517_00128	Z517_04368	A0A0D2H1H5	A0A0D2GKH2	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.683
Z517_00128	Z517_05347	A0A0D2H1H5	A0A0D2GUM4	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.994
Z517_00128	Z517_06941	A0A0D2H1H5	A0A0D2DR46	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	0.997
Z517_00128	Z517_09003	A0A0D2H1H5	A0A0D2GW48	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Structural maintenance of chromosomes protein.	0.991
Z517_00128	Z517_10270	A0A0D2H1H5	A0A0D2G474	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	0.980
Z517_00128	Z517_10284	A0A0D2H1H5	A0A0D2EMD9	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	0.963
Z517_00128	Z517_10320	A0A0D2H1H5	A0A0D2G4A9	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Structural maintenance of chromosomes protein.	0.963
Z517_00128	Z517_10665	A0A0D2H1H5	A0A0D2GAU9	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	0.410
Z517_00723	Z517_01441	A0A0D2GWE3	A0A0D2FHB8	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.999
Z517_00723	Z517_02594	A0A0D2GWE3	A0A0D2HFY2	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Serine/threonine-protein kinase.	0.656
Z517_00723	Z517_07191	A0A0D2GWE3	A0A0D2GPV8	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	0.999
Z517_01441	Z517_00723	A0A0D2FHB8	A0A0D2GWE3	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.999
Z517_01441	Z517_02594	A0A0D2FHB8	A0A0D2HFY2	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Serine/threonine-protein kinase.	0.806
Z517_01441	Z517_04411	A0A0D2FHB8	A0A0D2DUD6	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.930
Z517_01441	Z517_05229	A0A0D2FHB8	A0A0D2F696	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.646
Z517_01441	Z517_05839	A0A0D2FHB8	A0A0D2EYF0	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	0.673
Z517_01441	Z517_07191	A0A0D2FHB8	A0A0D2GPV8	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence.	0.999
Z517_01441	Z517_07552	A0A0D2FHB8	A0A0D2GZ54	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.473