(34 nodes) Protein ubiquitination network (Fonsecaea pedrosoi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z517_03180	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (613 aa)
	Z517_04665	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (1165 aa)
	Z517_07411	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (399 aa)
	Z517_01072	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence; Belongs to the ubiquitin-conjugating enzyme family. (533 aa)
	Z517_08678	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (2240 aa)
	Z517_08653	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence; Belongs to the ubiquitin-conjugating enzyme family. (205 aa)
	Z517_07782	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (417 aa)
	Z517_09945	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence. (1046 aa)
	Z517_00960	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (277 aa)
	Z517_09243	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence. (559 aa)
	Z517_05727	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (769 aa)
	Z517_12078	Unplaced genomic scaffold supercont1.8, whole genome shotgun sequence. (154 aa)
	Z517_02046	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (1408 aa)
	Z517_04061	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (313 aa)
	Z517_07410	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence; Belongs to the ubiquitin-conjugating enzyme family. (169 aa)
	Z517_09536	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence. (373 aa)
	Z517_07791	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (936 aa)
	Z517_10800	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence. (970 aa)
	Z517_00961	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (240 aa)
	Z517_11699	Histone H2B; Belongs to the histone H2B family. (141 aa)
	Z517_01880	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (1160 aa)
	Z517_07525	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (1249 aa)
	Z517_11053	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence; Belongs to the ubiquitin-conjugating enzyme family. (254 aa)
	Z517_11472	Unplaced genomic scaffold supercont1.8, whole genome shotgun sequence. (942 aa)
	Z517_01864	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (470 aa)
	Z517_00671	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence. (188 aa)
	Z517_06851	Unplaced genomic scaffold supercont1.4, whole genome shotgun sequence. (689 aa)
	Z517_08650	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (1038 aa)
	Z517_07729	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (495 aa)
	Z517_09862	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence. (457 aa)
	Z517_10962	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence; Belongs to the ubiquitin-conjugating enzyme family. (244 aa)
	Z517_11656	Unplaced genomic scaffold supercont1.8, whole genome shotgun sequence. (617 aa)
	Z517_03355	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (329 aa)
	Z517_03325	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (937 aa)

Your Current Organism:

Fonsecaea pedrosoi

NCBI taxonomy Id: 1442368
Other names: F. pedrosoi CBS 271.37, Fonsecaea pedrosoi CBS 271.37

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Export your current network:

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file format is 'PNG': portable network graphic

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Z517_00671	Z517_00960	A0A0D2E5A2	A0A0D2GX33	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.775
Z517_00671	Z517_00961	A0A0D2E5A2	A0A0D2HM98	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.775
Z517_00671	Z517_01864	A0A0D2E5A2	A0A0D2E8K5	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.605
Z517_00671	Z517_05727	A0A0D2E5A2	A0A0D2GVQ5	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.473
Z517_00671	Z517_07729	A0A0D2E5A2	A0A0D2DJS0	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.685
Z517_00671	Z517_08653	A0A0D2E5A2	A0A0D2H2C6	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence; Belongs to the ubiquitin-conjugating enzyme family.	0.851
Z517_00671	Z517_09243	A0A0D2E5A2	A0A0D2GWQ9	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence.	0.775
Z517_00671	Z517_09862	A0A0D2E5A2	A0A0D2DIA7	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.6, whole genome shotgun sequence.	0.688
Z517_00671	Z517_10962	A0A0D2E5A2	A0A0D2DEU0	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence; Belongs to the ubiquitin-conjugating enzyme family.	0.714
Z517_00671	Z517_11699	A0A0D2E5A2	A0A0D2G2E7	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Histone H2B; Belongs to the histone H2B family.	0.638
Z517_00671	Z517_12078	A0A0D2E5A2	A0A0D2GS68	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.8, whole genome shotgun sequence.	0.775
Z517_00960	Z517_00671	A0A0D2GX33	A0A0D2E5A2	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.775
Z517_00960	Z517_00961	A0A0D2GX33	A0A0D2HM98	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.556
Z517_00960	Z517_01072	A0A0D2GX33	A0A0D2H461	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence; Belongs to the ubiquitin-conjugating enzyme family.	0.856
Z517_00960	Z517_01864	A0A0D2GX33	A0A0D2E8K5	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.609
Z517_00960	Z517_01880	A0A0D2GX33	A0A0D2FIH8	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	0.466
Z517_00960	Z517_02046	A0A0D2GX33	A0A0D2GPA6	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.688
Z517_00960	Z517_03325	A0A0D2GX33	A0A0D2HI34	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.466
Z517_00960	Z517_04665	A0A0D2GX33	A0A0D2HAQ0	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.466
Z517_00960	Z517_05727	A0A0D2GX33	A0A0D2GVQ5	Unplaced genomic scaffold supercont1.1, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.646