(10 nodes) Ubiquitin homologues network (Fonsecaea pedrosoi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z517_12471	Unplaced genomic scaffold supercont1.10, whole genome shotgun sequence. (212 aa)
	Z517_05674	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (335 aa)
	Z517_10392	Ubiquitin carboxyl-terminal hydrolase. (578 aa)
	Z517_10855	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence. (702 aa)
	Z517_08401	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence. (125 aa)
	Z517_04669	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (686 aa)
	Z517_02563	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence. (229 aa)
	Z517_12078	Unplaced genomic scaffold supercont1.8, whole genome shotgun sequence. (154 aa)
	Z517_04384	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (462 aa)
	Z517_05481	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence. (104 aa)

Your Current Organism:

Fonsecaea pedrosoi

NCBI taxonomy Id: 1442368
Other names: F. pedrosoi CBS 271.37, Fonsecaea pedrosoi CBS 271.37

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Z517_02563	Z517_04384	A0A0D2GQQ0	A0A0D2H9W7	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.845
Z517_02563	Z517_04669	A0A0D2GQQ0	A0A0D2GL44	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.425
Z517_02563	Z517_05481	A0A0D2GQQ0	A0A0D2HD99	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.812
Z517_02563	Z517_08401	A0A0D2GQQ0	A0A0D2GCW8	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.895
Z517_02563	Z517_10392	A0A0D2GQQ0	A0A0D2G9Z1	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	Ubiquitin carboxyl-terminal hydrolase.	0.927
Z517_02563	Z517_10855	A0A0D2GQQ0	A0A0D2GBF6	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	0.930
Z517_02563	Z517_12078	A0A0D2GQQ0	A0A0D2GS68	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.8, whole genome shotgun sequence.	0.926
Z517_04384	Z517_02563	A0A0D2H9W7	A0A0D2GQQ0	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.845
Z517_04384	Z517_05481	A0A0D2H9W7	A0A0D2HD99	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.798
Z517_04384	Z517_08401	A0A0D2H9W7	A0A0D2GCW8	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.871
Z517_04384	Z517_10392	A0A0D2H9W7	A0A0D2G9Z1	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Ubiquitin carboxyl-terminal hydrolase.	0.850
Z517_04384	Z517_10855	A0A0D2H9W7	A0A0D2GBF6	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.7, whole genome shotgun sequence.	0.832
Z517_04384	Z517_12078	A0A0D2H9W7	A0A0D2GS68	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.8, whole genome shotgun sequence.	0.791
Z517_04384	Z517_12471	A0A0D2H9W7	A0A0D2D937	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.10, whole genome shotgun sequence.	0.845
Z517_04669	Z517_02563	A0A0D2GL44	A0A0D2GQQ0	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.425
Z517_04669	Z517_12471	A0A0D2GL44	A0A0D2D937	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.10, whole genome shotgun sequence.	0.425
Z517_05481	Z517_02563	A0A0D2HD99	A0A0D2GQQ0	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.2, whole genome shotgun sequence.	0.812
Z517_05481	Z517_04384	A0A0D2HD99	A0A0D2H9W7	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	0.798
Z517_05481	Z517_08401	A0A0D2HD99	A0A0D2GCW8	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Unplaced genomic scaffold supercont1.5, whole genome shotgun sequence.	0.791
Z517_05481	Z517_10392	A0A0D2HD99	A0A0D2G9Z1	Unplaced genomic scaffold supercont1.3, whole genome shotgun sequence.	Ubiquitin carboxyl-terminal hydrolase.	0.513