18 items (Rhinocladiella mackenziei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z518_10834	annotation not available (648 aa)
	Z518_10471	annotation not available (599 aa)
	Z518_08902	annotation not available (581 aa)
	Z518_07165	annotation not available (559 aa)
	Z518_05794	annotation not available (559 aa)
	Z518_00503	annotation not available (564 aa)
	Z518_11282	annotation not available (401 aa)
	Z518_06446	annotation not available (518 aa)
	Z518_11328	annotation not available (586 aa)
	Z518_00122	annotation not available (583 aa)
	Z518_04677	annotation not available (609 aa)
	Z518_01994	annotation not available (342 aa)
	Z518_01793	annotation not available (583 aa)
	Z518_07859	annotation not available (444 aa)
	Z518_01207	annotation not available (595 aa)
	Z518_07053	annotation not available (222 aa)
	Z518_07443	annotation not available (582 aa)
	Z518_05117	annotation not available (556 aa)

Your Current Organism:

Rhinocladiella mackenziei

NCBI taxonomy Id: 1442369
Other names: R. mackenziei CBS 650.93, Rhinocladiella mackenziei CBS 650.93

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Z518_00122	Z518_00503	A0A0D2ISV0	A0A0D2HFF7	annotation not available	annotation not available	0.406
Z518_00122	Z518_01207	A0A0D2ISV0	A0A0D2J379	annotation not available	annotation not available	0.455
Z518_00122	Z518_01994	A0A0D2ISV0	A0A0D2IVU2	annotation not available	annotation not available	0.474
Z518_00122	Z518_05117	A0A0D2ISV0	A0A0D2JD99	annotation not available	annotation not available	0.444
Z518_00122	Z518_11282	A0A0D2ISV0	A0A0D2I1F8	annotation not available	annotation not available	0.457
Z518_00503	Z518_00122	A0A0D2HFF7	A0A0D2ISV0	annotation not available	annotation not available	0.406
Z518_01207	Z518_00122	A0A0D2J379	A0A0D2ISV0	annotation not available	annotation not available	0.455
Z518_01207	Z518_04677	A0A0D2J379	A0A0D2IU60	annotation not available	annotation not available	0.436
Z518_01793	Z518_01994	A0A0D2IXE7	A0A0D2IVU2	annotation not available	annotation not available	0.514
Z518_01793	Z518_10834	A0A0D2IXE7	A0A0D2FCU3	annotation not available	annotation not available	0.460
Z518_01994	Z518_00122	A0A0D2IVU2	A0A0D2ISV0	annotation not available	annotation not available	0.474
Z518_01994	Z518_01793	A0A0D2IVU2	A0A0D2IXE7	annotation not available	annotation not available	0.514
Z518_01994	Z518_04677	A0A0D2IVU2	A0A0D2IU60	annotation not available	annotation not available	0.445
Z518_01994	Z518_06446	A0A0D2IVU2	A0A0D2IIL0	annotation not available	annotation not available	0.464
Z518_01994	Z518_07165	A0A0D2IVU2	A0A0D2FNI4	annotation not available	annotation not available	0.434
Z518_01994	Z518_08902	A0A0D2IVU2	A0A0D2FGP3	annotation not available	annotation not available	0.491
Z518_01994	Z518_10834	A0A0D2IVU2	A0A0D2FCU3	annotation not available	annotation not available	0.436
Z518_01994	Z518_11328	A0A0D2IVU2	A0A0D2IS83	annotation not available	annotation not available	0.414
Z518_04677	Z518_01207	A0A0D2IU60	A0A0D2J379	annotation not available	annotation not available	0.436
Z518_04677	Z518_01994	A0A0D2IU60	A0A0D2IVU2	annotation not available	annotation not available	0.445