(56 nodes) Lysine catabolism, and FAD dependent oxidoreductase network (Rhinocladiella mackenziei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z518_10229	annotation not available (383 aa)
	Z518_10239	annotation not available (405 aa)
	Z518_09313	annotation not available (704 aa)
	Z518_06723	annotation not available (462 aa)
	Z518_07746	annotation not available (353 aa)
	Z518_05788	annotation not available (426 aa)
	Z518_05844	annotation not available (523 aa)
	Z518_04106	annotation not available (481 aa)
	Z518_02356	annotation not available (302 aa)
	Z518_02933	annotation not available (398 aa)
	Z518_03459	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family. (191 aa)
	Z518_03504	annotation not available (155 aa)
	Z518_10235	annotation not available (828 aa)
	Z518_10240	annotation not available (307 aa)
	Z518_10427	annotation not available (455 aa)
	Z518_09888	annotation not available (121 aa)
	Z518_10003	annotation not available (315 aa)
	Z518_08928	annotation not available (423 aa)
	Z518_07867	annotation not available (423 aa)
	Z518_08615	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine. (1011 aa)
	Z518_08675	annotation not available (655 aa)
	Z518_08725	annotation not available (455 aa)
	Z518_07086	annotation not available (263 aa)
	Z518_04208	annotation not available (488 aa)
	Z518_05105	annotation not available (455 aa)
	Z518_03244	annotation not available (427 aa)
	Z518_00452	annotation not available (425 aa)
	Z518_01029	5-aminolevulinate synthase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. (609 aa)
	Z518_01109	annotation not available (538 aa)
	Z518_10951	annotation not available (265 aa)
	Z518_11013	annotation not available (102 aa)
	Z518_08310	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family. (494 aa)
	Z518_08450	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (367 aa)
	Z518_10238	annotation not available (687 aa)
	Z518_09681	annotation not available (465 aa)
	Z518_08966	annotation not available (193 aa)
	Z518_05841	annotation not available (495 aa)
	Z518_08608	annotation not available (452 aa)
	Z518_07414	annotation not available (421 aa)
	Z518_05451	annotation not available (574 aa)
	Z518_05787	annotation not available (320 aa)
	Z518_10242	annotation not available (350 aa)
	Z518_04737	annotation not available (201 aa)
	Z518_01220	annotation not available (465 aa)
	Z518_03242	annotation not available (375 aa)
	Z518_09597	annotation not available (999 aa)
	Z518_00882	annotation not available (352 aa)
	Z518_01302	annotation not available (382 aa)
	Z518_06117	annotation not available (110 aa)
	Z518_02088	annotation not available (329 aa)
	Z518_02334	annotation not available (494 aa)
	Z518_03241	annotation not available (584 aa)
	Z518_03567	annotation not available (325 aa)
	Z518_00485	annotation not available (442 aa)
	Z518_01387	annotation not available (439 aa)
	Z518_01427	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (531 aa)

Your Current Organism:

Rhinocladiella mackenziei

NCBI taxonomy Id: 1442369
Other names: R. mackenziei CBS 650.93, Rhinocladiella mackenziei CBS 650.93

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Z518_00452	Z518_01220	A0A0D2HFA0	A0A0D2IVS1	annotation not available	annotation not available	0.569
Z518_00452	Z518_01302	A0A0D2HFA0	A0A0D2J3D8	annotation not available	annotation not available	0.555
Z518_00452	Z518_02334	A0A0D2HFA0	A0A0D2JEQ6	annotation not available	annotation not available	0.569
Z518_00452	Z518_03459	A0A0D2HFA0	A0A0D2G2M4	annotation not available	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.487
Z518_00452	Z518_05451	A0A0D2HFA0	A0A0D2IN82	annotation not available	annotation not available	0.569
Z518_00452	Z518_07414	A0A0D2HFA0	A0A0D2IKY4	annotation not available	annotation not available	0.555
Z518_00452	Z518_08310	A0A0D2HFA0	A0A0D2I959	annotation not available	Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.	0.569
Z518_00452	Z518_08615	A0A0D2HFA0	A0A0D2GWR8	annotation not available	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.491
Z518_00452	Z518_08928	A0A0D2HFA0	A0A0D2GS93	annotation not available	annotation not available	0.555
Z518_00452	Z518_09888	A0A0D2HFA0	A0A0D2GR75	annotation not available	annotation not available	0.555
Z518_00452	Z518_10235	A0A0D2HFA0	A0A0D2GP37	annotation not available	annotation not available	0.569
Z518_00485	Z518_01220	A0A0D2JJ13	A0A0D2IVS1	annotation not available	annotation not available	0.569
Z518_00485	Z518_01302	A0A0D2JJ13	A0A0D2J3D8	annotation not available	annotation not available	0.555
Z518_00485	Z518_01427	A0A0D2JJ13	A0A0D2JLK0	annotation not available	Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.	0.506
Z518_00485	Z518_02088	A0A0D2JJ13	A0A0D2JE16	annotation not available	annotation not available	0.491
Z518_00485	Z518_02334	A0A0D2JJ13	A0A0D2JEQ6	annotation not available	annotation not available	0.570
Z518_00485	Z518_03459	A0A0D2JJ13	A0A0D2G2M4	annotation not available	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.487
Z518_00485	Z518_03567	A0A0D2JJ13	A0A0D2JHU5	annotation not available	annotation not available	0.491
Z518_00485	Z518_05451	A0A0D2JJ13	A0A0D2IN82	annotation not available	annotation not available	0.570
Z518_00485	Z518_07414	A0A0D2JJ13	A0A0D2IKY4	annotation not available	annotation not available	0.555