(32 nodes) Mixed, incl. TP53 Regulates Transcription of Cell Cycle Genes, and Threonine catabolism network (Rhinocladiella mackenziei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z518_06532	annotation not available (2318 aa)
	Z518_06542	annotation not available (325 aa)
	Z518_07250	annotation not available (1630 aa)
	Z518_07260	annotation not available (1552 aa)
	Z518_05889	annotation not available (410 aa)
	Z518_04648	annotation not available (647 aa)
	Z518_01283	annotation not available (477 aa)
	Z518_08304	annotation not available (199 aa)
	Z518_03670	annotation not available (630 aa)
	Z518_04649	annotation not available (662 aa)
	Z518_11341	annotation not available (254 aa)
	Z518_10332	annotation not available (128 aa)
	Z518_10953	annotation not available (521 aa)
	Z518_09891	annotation not available (631 aa)
	Z518_08165	annotation not available (475 aa)
	Z518_08200	annotation not available (137 aa)
	Z518_06406	annotation not available (618 aa)
	Z518_07459	annotation not available (134 aa)
	Z518_05682	annotation not available (623 aa)
	Z518_02247	annotation not available (149 aa)
	Z518_06048	annotation not available (151 aa)
	Z518_06413	annotation not available (614 aa)
	Z518_03406	annotation not available (305 aa)
	Z518_02620	annotation not available (562 aa)
	Z518_09050	annotation not available (283 aa)
	Z518_03428	annotation not available (367 aa)
	Z518_08652	annotation not available (747 aa)
	Z518_02158	annotation not available (126 aa)
	Z518_02811	annotation not available (403 aa)
	Z518_02966	annotation not available (1280 aa)
	Z518_00228	annotation not available (1038 aa)
	Z518_00610	annotation not available (546 aa)

Your Current Organism:

Rhinocladiella mackenziei

NCBI taxonomy Id: 1442369
Other names: R. mackenziei CBS 650.93, Rhinocladiella mackenziei CBS 650.93

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Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Z518_00228	Z518_01283	A0A0D2JIC2	A0A0D2G5N2	annotation not available	annotation not available	0.788
Z518_00228	Z518_06406	A0A0D2JIC2	A0A0D2III0	annotation not available	annotation not available	0.414
Z518_00228	Z518_08652	A0A0D2JIC2	A0A0D2J1D4	annotation not available	annotation not available	0.679
Z518_01283	Z518_00228	A0A0D2G5N2	A0A0D2JIC2	annotation not available	annotation not available	0.788
Z518_01283	Z518_05889	A0A0D2G5N2	A0A0D2FSD8	annotation not available	annotation not available	0.997
Z518_01283	Z518_06413	A0A0D2G5N2	A0A0D2IQV9	annotation not available	annotation not available	0.420
Z518_01283	Z518_06532	A0A0D2G5N2	A0A0D2FLX6	annotation not available	annotation not available	0.997
Z518_01283	Z518_07250	A0A0D2G5N2	A0A0D2FNP3	annotation not available	annotation not available	0.993
Z518_01283	Z518_08165	A0A0D2G5N2	A0A0D2IG26	annotation not available	annotation not available	0.979
Z518_01283	Z518_08304	A0A0D2G5N2	A0A0D2GVR4	annotation not available	annotation not available	0.969
Z518_01283	Z518_08652	A0A0D2G5N2	A0A0D2J1D4	annotation not available	annotation not available	0.996
Z518_01283	Z518_09891	A0A0D2G5N2	A0A0D2IC41	annotation not available	annotation not available	0.991
Z518_02158	Z518_05889	A0A0D2JED3	A0A0D2FSD8	annotation not available	annotation not available	0.467
Z518_02158	Z518_06532	A0A0D2JED3	A0A0D2FLX6	annotation not available	annotation not available	0.454
Z518_02158	Z518_07250	A0A0D2JED3	A0A0D2FNP3	annotation not available	annotation not available	0.467
Z518_02158	Z518_09891	A0A0D2JED3	A0A0D2IC41	annotation not available	annotation not available	0.419
Z518_02247	Z518_05889	A0A0D2IP34	A0A0D2FSD8	annotation not available	annotation not available	0.467
Z518_02247	Z518_06532	A0A0D2IP34	A0A0D2FLX6	annotation not available	annotation not available	0.454
Z518_02247	Z518_07250	A0A0D2IP34	A0A0D2FNP3	annotation not available	annotation not available	0.467
Z518_02247	Z518_09891	A0A0D2IP34	A0A0D2IC41	annotation not available	annotation not available	0.419