15 items (Rhinocladiella mackenziei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z518_05194	annotation not available (348 aa)
	Z518_03926	Belongs to the cullin family. (723 aa)
	Z518_02486	Belongs to the ubiquitin-conjugating enzyme family. (184 aa)
	Z518_09998	annotation not available (2034 aa)
	Z518_11391	annotation not available (369 aa)
	Z518_09761	annotation not available (226 aa)
	Z518_07262	annotation not available (796 aa)
	Z518_05740	Belongs to the ubiquitin-conjugating enzyme family. (340 aa)
	Z518_04475	annotation not available (1406 aa)
	Z518_06058	annotation not available (767 aa)
	Z518_00027	annotation not available (722 aa)
	Z518_00780	annotation not available (759 aa)
	Z518_01340	annotation not available (582 aa)
	Z518_05077	annotation not available (269 aa)
	Z518_01928	annotation not available (793 aa)

Your Current Organism:

Rhinocladiella mackenziei

NCBI taxonomy Id: 1442369
Other names: R. mackenziei CBS 650.93, Rhinocladiella mackenziei CBS 650.93

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Z518_00027	Z518_00780	A0A0D2ISJ2	A0A0D2IUF7	annotation not available	annotation not available	0.999
Z518_00027	Z518_01340	A0A0D2ISJ2	A0A0D2IW38	annotation not available	annotation not available	0.970
Z518_00027	Z518_01928	A0A0D2ISJ2	A0A0D2JDL3	annotation not available	annotation not available	0.999
Z518_00027	Z518_02486	A0A0D2ISJ2	A0A0D2FZT9	annotation not available	Belongs to the ubiquitin-conjugating enzyme family.	0.997
Z518_00027	Z518_03926	A0A0D2ISJ2	A0A0D2FV32	annotation not available	Belongs to the cullin family.	0.999
Z518_00027	Z518_04475	A0A0D2ISJ2	A0A0D2ILD5	annotation not available	annotation not available	0.987
Z518_00027	Z518_05077	A0A0D2ISJ2	A0A0D2JD66	annotation not available	annotation not available	0.999
Z518_00027	Z518_05194	A0A0D2ISJ2	A0A0D2FQ48	annotation not available	annotation not available	0.946
Z518_00027	Z518_05740	A0A0D2ISJ2	A0A0D2IGG1	annotation not available	Belongs to the ubiquitin-conjugating enzyme family.	0.995
Z518_00027	Z518_06058	A0A0D2ISJ2	A0A0D2IPS7	annotation not available	annotation not available	0.999
Z518_00027	Z518_07262	A0A0D2ISJ2	A0A0D2ICY1	annotation not available	annotation not available	0.999
Z518_00027	Z518_09761	A0A0D2ISJ2	A0A0D2IBP2	annotation not available	annotation not available	0.989
Z518_00027	Z518_09998	A0A0D2ISJ2	A0A0D2GRK2	annotation not available	annotation not available	0.999
Z518_00027	Z518_11391	A0A0D2ISJ2	A0A0D2I102	annotation not available	annotation not available	0.999
Z518_00780	Z518_00027	A0A0D2IUF7	A0A0D2ISJ2	annotation not available	annotation not available	0.999
Z518_00780	Z518_01340	A0A0D2IUF7	A0A0D2IW38	annotation not available	annotation not available	0.969
Z518_00780	Z518_01928	A0A0D2IUF7	A0A0D2JDL3	annotation not available	annotation not available	0.999
Z518_00780	Z518_02486	A0A0D2IUF7	A0A0D2FZT9	annotation not available	Belongs to the ubiquitin-conjugating enzyme family.	0.997
Z518_00780	Z518_03926	A0A0D2IUF7	A0A0D2FV32	annotation not available	Belongs to the cullin family.	0.999
Z518_00780	Z518_04475	A0A0D2IUF7	A0A0D2ILD5	annotation not available	annotation not available	0.990