(15 nodes) Snf7, and ALIX V-shaped domain network (Rhinocladiella mackenziei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z518_04277	annotation not available (205 aa)
	Z518_02280	annotation not available (221 aa)
	Z518_07231	annotation not available (219 aa)
	Z518_03435	annotation not available (220 aa)
	Z518_09789	Belongs to the AAA ATPase family. (436 aa)
	Z518_09425	annotation not available (513 aa)
	Z518_08676	annotation not available (206 aa)
	Z518_09806	Belongs to the AAA ATPase family. (816 aa)
	Z518_07092	annotation not available (351 aa)
	Z518_08130	annotation not available (1061 aa)
	Z518_04279	annotation not available (237 aa)
	Z518_04410	annotation not available (842 aa)
	Z518_05641	annotation not available (217 aa)
	Z518_05243	annotation not available (224 aa)
	Z518_03407	annotation not available (466 aa)

Your Current Organism:

Rhinocladiella mackenziei

NCBI taxonomy Id: 1442369
Other names: R. mackenziei CBS 650.93, Rhinocladiella mackenziei CBS 650.93

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Z518_02280	Z518_03407	A0A0D2FZB5	A0A0D2JHB8	annotation not available	annotation not available	0.867
Z518_02280	Z518_03435	A0A0D2FZB5	A0A0D2HDY6	annotation not available	annotation not available	0.970
Z518_02280	Z518_04277	A0A0D2FZB5	A0A0D2FVW8	annotation not available	annotation not available	0.966
Z518_02280	Z518_04279	A0A0D2FZB5	A0A0D2IKR8	annotation not available	annotation not available	0.704
Z518_02280	Z518_04410	A0A0D2FZB5	A0A0D2IL52	annotation not available	annotation not available	0.971
Z518_02280	Z518_05243	A0A0D2FZB5	A0A0D2J5P1	annotation not available	annotation not available	0.981
Z518_02280	Z518_05641	A0A0D2FZB5	A0A0D2INR6	annotation not available	annotation not available	0.969
Z518_02280	Z518_07092	A0A0D2FZB5	A0A0D2ICI8	annotation not available	annotation not available	0.933
Z518_02280	Z518_08130	A0A0D2FZB5	A0A0D2IFZ3	annotation not available	annotation not available	0.986
Z518_02280	Z518_08676	A0A0D2FZB5	A0A0D2IA25	annotation not available	annotation not available	0.969
Z518_02280	Z518_09425	A0A0D2FZB5	A0A0D2I791	annotation not available	annotation not available	0.885
Z518_02280	Z518_09789	A0A0D2FZB5	A0A0D2I4J8	annotation not available	Belongs to the AAA ATPase family.	0.972
Z518_02280	Z518_09806	A0A0D2FZB5	A0A0D2IBU1	annotation not available	Belongs to the AAA ATPase family.	0.658
Z518_03407	Z518_02280	A0A0D2JHB8	A0A0D2FZB5	annotation not available	annotation not available	0.867
Z518_03407	Z518_03435	A0A0D2JHB8	A0A0D2HDY6	annotation not available	annotation not available	0.922
Z518_03407	Z518_04277	A0A0D2JHB8	A0A0D2FVW8	annotation not available	annotation not available	0.891
Z518_03407	Z518_04279	A0A0D2JHB8	A0A0D2IKR8	annotation not available	annotation not available	0.818
Z518_03407	Z518_04410	A0A0D2JHB8	A0A0D2IL52	annotation not available	annotation not available	0.648
Z518_03407	Z518_05243	A0A0D2JHB8	A0A0D2J5P1	annotation not available	annotation not available	0.992
Z518_03407	Z518_05641	A0A0D2JHB8	A0A0D2INR6	annotation not available	annotation not available	0.990