STRINGSTRING
Z518_11354 Z518_11354 Z518_10371 Z518_10371 Z518_10118 Z518_10118 Z518_09007 Z518_09007 Z518_09328 Z518_09328 Z518_08328 Z518_08328 Z518_07155 Z518_07155 Z518_07240 Z518_07240 Z518_07535 Z518_07535 Z518_05149 Z518_05149 Z518_03634 Z518_03634 Z518_03744 Z518_03744 Z518_04031 Z518_04031 Z518_04066 Z518_04066 Z518_04498 Z518_04498 Z518_04788 Z518_04788 Z518_01950 Z518_01950 Z518_02526 Z518_02526 Z518_00015 Z518_00015 Z518_00085 Z518_00085 Z518_00718 Z518_00718 Z518_00993 Z518_00993 Z518_01243 Z518_01243 Z518_01429 Z518_01429 Z518_01454 Z518_01454 Z518_01701 Z518_01701 Z518_10643 Z518_10643 Z518_10079 Z518_10079 Z518_08918 Z518_08918 Z518_09008 Z518_09008 Z518_09154 Z518_09154 Z518_08187 Z518_08187 Z518_06724 Z518_06724 Z518_06960 Z518_06960 Z518_07101 Z518_07101 Z518_07656 Z518_07656 Z518_05403 Z518_05403 Z518_06045 Z518_06045 Z518_03977 Z518_03977 Z518_01846 Z518_01846 Z518_03269 Z518_03269 Z518_01687 Z518_01687 Z518_10911 Z518_10911 Z518_09689 Z518_09689 Z518_09759 Z518_09759 Z518_08138 Z518_08138 Z518_10666 Z518_10666 Z518_06649 Z518_06649 Z518_06916 Z518_06916 Z518_07072 Z518_07072 Z518_10147 Z518_10147 Z518_09046 Z518_09046 Z518_07577 Z518_07577 Z518_07738 Z518_07738 Z518_09327 Z518_09327 Z518_09337 Z518_09337 Z518_05292 Z518_05292 Z518_05359 Z518_05359 Z518_08005 Z518_08005 Z518_08085 Z518_08085 Z518_08210 Z518_08210 Z518_08437 Z518_08437 Z518_06858 Z518_06858 Z518_04855 Z518_04855 Z518_01827 Z518_01827 Z518_05777 Z518_05777 Z518_02699 Z518_02699 Z518_03015 Z518_03015 Z518_04010 Z518_04010 Z518_00529 Z518_00529 Z518_04557 Z518_04557 Z518_00850 Z518_00850 Z518_00900 Z518_00900 Z518_01145 Z518_01145 Z518_01205 Z518_01205 Z518_01315 Z518_01315 Z518_10146 Z518_10146 Z518_01617 Z518_01617 Z518_09321 Z518_09321 Z518_08306 Z518_08306 Z518_00486 Z518_00486 Z518_06490 Z518_06490 Z518_00872 Z518_00872 Z518_01082 Z518_01082 Z518_01408 Z518_01408 Z518_07513 Z518_07513 Z518_07714 Z518_07714 Z518_05182 Z518_05182 Z518_05293 Z518_05293 Z518_05400 Z518_05400 Z518_05872 Z518_05872 Z518_06187 Z518_06187 Z518_04911 Z518_04911 Z518_02705 Z518_02705 Z518_02866 Z518_02866 Z518_00811 Z518_00811 Z518_01086 Z518_01086
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Z518_11354annotation not available (1026 aa)
Z518_10371Belongs to the protein kinase superfamily. (420 aa)
Z518_10118annotation not available (834 aa)
Z518_09007annotation not available (662 aa)
Z518_09328annotation not available (169 aa)
Z518_08328annotation not available (536 aa)
Z518_07155annotation not available (1108 aa)
Z518_07240annotation not available (1274 aa)
Z518_07535FACT complex subunit POB3; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of [...] (586 aa)
Z518_05149annotation not available (187 aa)
Z518_03634annotation not available (793 aa)
Z518_03744annotation not available (465 aa)
Z518_04031annotation not available (967 aa)
Z518_04066Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (122 aa)
Z518_04498annotation not available (494 aa)
Z518_04788Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family. (1423 aa)
Z518_01950annotation not available (560 aa)
Z518_02526annotation not available (376 aa)
Z518_00015General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (463 aa)
Z518_00085annotation not available (763 aa)
Z518_00718annotation not available (450 aa)
Z518_00993annotation not available (1238 aa)
Z518_01243annotation not available (555 aa)
Z518_01429Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (122 aa)
Z518_01454annotation not available (674 aa)
Z518_01701annotation not available (278 aa)
Z518_10643Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (1095 aa)
Z518_10079RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (857 aa)
Z518_08918annotation not available (294 aa)
Z518_09008annotation not available (230 aa)
Z518_09154annotation not available (305 aa)
Z518_08187annotation not available (1252 aa)
Z518_06724annotation not available (275 aa)
Z518_06960annotation not available (327 aa)
Z518_07101annotation not available (807 aa)
Z518_07656annotation not available (632 aa)
Z518_05403annotation not available (542 aa)
Z518_06045annotation not available (465 aa)
Z518_03977annotation not available (476 aa)
Z518_01846annotation not available (608 aa)
Z518_03269annotation not available (719 aa)
Z518_01687annotation not available (595 aa)
Z518_10911Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...] (238 aa)
Z518_09689annotation not available (78 aa)
Z518_09759annotation not available (323 aa)
Z518_08138annotation not available (560 aa)
Z518_10666annotation not available (265 aa)
Z518_06649Belongs to the cyclin family. (523 aa)
Z518_06916Histone H3; Belongs to the histone H3 family. (136 aa)
Z518_07072annotation not available (365 aa)
Z518_10147Histone H2B; Belongs to the histone H2B family. (141 aa)
Z518_09046annotation not available (377 aa)
Z518_07577annotation not available (671 aa)
Z518_07738Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (713 aa)
Z518_09327annotation not available (557 aa)
Z518_09337annotation not available (818 aa)
Z518_05292Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (111 aa)
Z518_05359annotation not available (204 aa)
Z518_08005annotation not available (231 aa)
Z518_08085annotation not available (626 aa)
Z518_08210annotation not available (443 aa)
Z518_08437annotation not available (209 aa)
Z518_06858annotation not available (623 aa)
Z518_04855RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (499 aa)
Z518_01827annotation not available (767 aa)
Z518_05777annotation not available (201 aa)
Z518_02699DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1760 aa)
Z518_03015annotation not available (413 aa)
Z518_04010annotation not available (260 aa)
Z518_00529Belongs to the cyclin family. (383 aa)
Z518_04557annotation not available (290 aa)
Z518_00850annotation not available (354 aa)
Z518_00900annotation not available (848 aa)
Z518_01145annotation not available (287 aa)
Z518_01205annotation not available (214 aa)
Z518_01315annotation not available (205 aa)
Z518_10146Histone H2A; Belongs to the histone H2A family. (132 aa)
Z518_01617annotation not available (153 aa)
Z518_09321annotation not available (152 aa)
Z518_08306annotation not available (247 aa)
Z518_00486annotation not available (614 aa)
Z518_06490annotation not available (264 aa)
Z518_00872annotation not available (1012 aa)
Z518_01082annotation not available (524 aa)
Z518_01408annotation not available (307 aa)
Z518_07513annotation not available (119 aa)
Z518_07714annotation not available (154 aa)
Z518_05182annotation not available (336 aa)
Z518_05293annotation not available (345 aa)
Z518_05400annotation not available (424 aa)
Z518_05872annotation not available (379 aa)
Z518_06187Belongs to the cyclin family. (399 aa)
Z518_04911annotation not available (537 aa)
Z518_02705DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1260 aa)
Z518_02866annotation not available (268 aa)
Z518_00811annotation not available (397 aa)
Z518_01086Transcription elongation factor SPT4; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene. (117 aa)
Your Current Organism:
Rhinocladiella mackenziei
NCBI taxonomy Id: 1442369
Other names: R. mackenziei CBS 650.93, Rhinocladiella mackenziei CBS 650.93
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