17 items (Rhinocladiella mackenziei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z518_11215	annotation not available (296 aa)
	Z518_09657	annotation not available (533 aa)
	Z518_04358	annotation not available (1180 aa)
	Z518_04898	annotation not available (976 aa)
	Z518_01810	U3 small nucleolar RNA-associated protein 22. (1149 aa)
	Z518_02401	annotation not available (974 aa)
	Z518_07127	annotation not available (613 aa)
	Z518_04795	annotation not available (391 aa)
	Z518_05546	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (737 aa)
	Z518_06178	annotation not available (1105 aa)
	Z518_02835	annotation not available (315 aa)
	Z518_09080	annotation not available (188 aa)
	Z518_03227	annotation not available (1792 aa)
	Z518_09577	annotation not available (970 aa)
	Z518_08179	annotation not available (405 aa)
	Z518_02680	annotation not available (1848 aa)
	Z518_00751	annotation not available (888 aa)

Your Current Organism:

Rhinocladiella mackenziei

NCBI taxonomy Id: 1442369
Other names: R. mackenziei CBS 650.93, Rhinocladiella mackenziei CBS 650.93

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Z518_00751	Z518_01810	A0A0D2JJP2	A0A0D2FXY5	annotation not available	U3 small nucleolar RNA-associated protein 22.	0.999
Z518_00751	Z518_02401	A0A0D2JJP2	A0A0D2FZL3	annotation not available	annotation not available	0.999
Z518_00751	Z518_02680	A0A0D2JJP2	A0A0D2JFK0	annotation not available	annotation not available	0.999
Z518_00751	Z518_02835	A0A0D2JJP2	A0A0D2IQG6	annotation not available	annotation not available	0.996
Z518_00751	Z518_03227	A0A0D2JJP2	A0A0D2IYX3	annotation not available	annotation not available	0.998
Z518_00751	Z518_04358	A0A0D2JJP2	A0A0D2FW46	annotation not available	annotation not available	0.998
Z518_00751	Z518_04795	A0A0D2JJP2	A0A0D2IM32	annotation not available	annotation not available	0.999
Z518_00751	Z518_04898	A0A0D2JJP2	A0A0D2FX61	annotation not available	annotation not available	0.999
Z518_00751	Z518_05546	A0A0D2JJP2	A0A0D2ING4	annotation not available	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.996
Z518_00751	Z518_06178	A0A0D2JJP2	A0A0D2IQ39	annotation not available	annotation not available	0.999
Z518_00751	Z518_07127	A0A0D2JJP2	A0A0D2ICK9	annotation not available	annotation not available	0.999
Z518_00751	Z518_08179	A0A0D2JJP2	A0A0D2J024	annotation not available	annotation not available	0.996
Z518_00751	Z518_09080	A0A0D2JJP2	A0A0D2IXN9	annotation not available	annotation not available	0.995
Z518_00751	Z518_09577	A0A0D2JJP2	A0A0D2IYZ1	annotation not available	annotation not available	0.999
Z518_00751	Z518_09657	A0A0D2JJP2	A0A0D2FF07	annotation not available	annotation not available	0.998
Z518_00751	Z518_11215	A0A0D2JJP2	A0A0D2FBL6	annotation not available	annotation not available	0.996
Z518_01810	Z518_00751	A0A0D2FXY5	A0A0D2JJP2	U3 small nucleolar RNA-associated protein 22.	annotation not available	0.999
Z518_01810	Z518_02401	A0A0D2FXY5	A0A0D2FZL3	U3 small nucleolar RNA-associated protein 22.	annotation not available	0.999
Z518_01810	Z518_02680	A0A0D2FXY5	A0A0D2JFK0	U3 small nucleolar RNA-associated protein 22.	annotation not available	0.999
Z518_01810	Z518_02835	A0A0D2FXY5	A0A0D2IQG6	U3 small nucleolar RNA-associated protein 22.	annotation not available	0.999