STRINGSTRING
Z518_10198 Z518_10198 Z518_09787 Z518_09787 Z518_09657 Z518_09657 YTM1 YTM1 Z518_10481 Z518_10481 Z518_10814 Z518_10814 Z518_10759 Z518_10759 Z518_10694 Z518_10694 Z518_11084 Z518_11084 Z518_11215 Z518_11215 Z518_11414 Z518_11414 Z518_01447 Z518_01447 Z518_01266 Z518_01266 Z518_01016 Z518_01016 Z518_00931 Z518_00931 Z518_00751 Z518_00751 Z518_00550 Z518_00550 SPB1 SPB1 Z518_03021 Z518_03021 Z518_02921 Z518_02921 Z518_02851 Z518_02851 Z518_02776 Z518_02776 Z518_02680 Z518_02680 Z518_02504 Z518_02504 Z518_02499 Z518_02499 Z518_02163 Z518_02163 Z518_01828 Z518_01828 Z518_05057 Z518_05057 Z518_04195 Z518_04195 Z518_03808 Z518_03808 Z518_06422 Z518_06422 Z518_06417 Z518_06417 Z518_06227 Z518_06227 Z518_05972 Z518_05972 Z518_05555 Z518_05555 Z518_05203 Z518_05203 Z518_05197 Z518_05197 Z518_05172 Z518_05172 Z518_07358 Z518_07358 Z518_07338 Z518_07338 Z518_07223 Z518_07223 Z518_01468 Z518_01468 Z518_06967 Z518_06967 Z518_06857 Z518_06857 Z518_06686 Z518_06686 Z518_00977 Z518_00977 Z518_00932 Z518_00932 Z518_06485 Z518_06485 Z518_00727 Z518_00727 Z518_08773 Z518_08773 Z518_08371 Z518_08371 Z518_08179 Z518_08179 Z518_03378 Z518_03378 Z518_09577 Z518_09577 Z518_03227 Z518_03227 Z518_02982 Z518_02982 Z518_02972 Z518_02972 Z518_09080 Z518_09080 Z518_01688 Z518_01688 Z518_01486 Z518_01486 Z518_02395 Z518_02395 TSR3 TSR3 Z518_02330 Z518_02330 Z518_02274 Z518_02274 Z518_02154 Z518_02154 Z518_09975 Z518_09975 Z518_09930 Z518_09930 Z518_04982 Z518_04982 Z518_00965 Z518_00965 Z518_04802 Z518_04802 Z518_10519 Z518_10519 Z518_00207 Z518_00207 Z518_10702 Z518_10702 Z518_03728 Z518_03728 Z518_03200 Z518_03200 Z518_03165 Z518_03165 Z518_03085 Z518_03085 Z518_03080 Z518_03080 Z518_02965 Z518_02965 Z518_02835 Z518_02835 Z518_06288 Z518_06288 Z518_06178 Z518_06178 Z518_02022 Z518_02022 Z518_05546 Z518_05546 Z518_05461 Z518_05461 Z518_01897 Z518_01897 Z518_05351 Z518_05351 Z518_05314 Z518_05314 Z518_04795 Z518_04795 Z518_07755 Z518_07755 Z518_07644 Z518_07644 Z518_07549 Z518_07549 Z518_04435 Z518_04435 Z518_07474 Z518_07474 Z518_07384 Z518_07384 Z518_07359 Z518_07359 Z518_04123 Z518_04123 Z518_03993 Z518_03993 Z518_03958 Z518_03958 Z518_03883 Z518_03883 Z518_06361 Z518_06361 Z518_06336 Z518_06336 Z518_08869 Z518_08869 Z518_08849 Z518_08849 Z518_08799 Z518_08799 Z518_06181 Z518_06181 Z518_08759 Z518_08759 Z518_08643 Z518_08643 Z518_05976 Z518_05976 Z518_05876 Z518_05876 Z518_05825 Z518_05825 Z518_05770 Z518_05770 Z518_05690 Z518_05690 Z518_08150 Z518_08150 Z518_08060 Z518_08060 Z518_07895 Z518_07895 Z518_09503 Z518_09503 Z518_05156 Z518_05156 Z518_07602 Z518_07602 Z518_08961 Z518_08961 Z518_07227 Z518_07227 Z518_10052 Z518_10052 Z518_07127 Z518_07127 Z518_09846 Z518_09846 Z518_06771 Z518_06771 Z518_06679 Z518_06679 Z518_10510 Z518_10510 Z518_08757 Z518_08757 Z518_10843 Z518_10843 Z518_11403 Z518_11403 Z518_09476 Z518_09476 Z518_10080 Z518_10080 Z518_10065 Z518_10065 Z518_09764 Z518_09764 Z518_10971 Z518_10971 Z518_10856 Z518_10856 Z518_01455 Z518_01455 Z518_01189 Z518_01189 Z518_01024 Z518_01024 Z518_00678 Z518_00678 Z518_00236 Z518_00236 Z518_00216 Z518_00216 Z518_03284 Z518_03284 Z518_03164 Z518_03164 Z518_03074 Z518_03074 Z518_02281 Z518_02281 Z518_02036 Z518_02036 Z518_05040 Z518_05040 Z518_04894 Z518_04894 NOP7 NOP7 Z518_03690 Z518_03690 LSM4 LSM4 Z518_06115 Z518_06115 Z518_05664 Z518_05664 Z518_05553 Z518_05553 Z518_05513 Z518_05513 Z518_05503 Z518_05503 LSM8 LSM8 Z518_05135 Z518_05135 Z518_07692 Z518_07692 Z518_06985 Z518_06985 Z518_06930 Z518_06930 Z518_06508 Z518_06508 Z518_08585 Z518_08585 Z518_08142 Z518_08142 Z518_07852 Z518_07852 Z518_09389 Z518_09389 Z518_09304 Z518_09304 NAT10 NAT10 Z518_09843 Z518_09843 Z518_09743 Z518_09743 Z518_10668 Z518_10668 Z518_10457 Z518_10457 Z518_10442 Z518_10442 Z518_10285 Z518_10285 Z518_10265 Z518_10265 Z518_11035 Z518_11035 Z518_11415 Z518_11415 Z518_01625 Z518_01625 Z518_01459 Z518_01459 Z518_01193 Z518_01193 Z518_01173 Z518_01173 Z518_00858 Z518_00858 Z518_00180 Z518_00180 Z518_02421 Z518_02421 Z518_02401 Z518_02401 Z518_02025 Z518_02025 Z518_01810 Z518_01810 Z518_05054 Z518_05054 Z518_04908 Z518_04908 Z518_04898 Z518_04898 ERB1 ERB1 Z518_04483 Z518_04483 Z518_04358 Z518_04358 Z518_04076 Z518_04076 Z518_03870 Z518_03870 Z518_03845 Z518_03845 Z518_06409 Z518_06409 Z518_06314 Z518_06314 Z518_06294 Z518_06294 Z518_06174 Z518_06174 Z518_05487 Z518_05487 Z518_05270 Z518_05270 Z518_05144 Z518_05144 Z518_07650 Z518_07650 Z518_07290 Z518_07290 Z518_07125 Z518_07125 Z518_07065 Z518_07065 Z518_06779 Z518_06779 Z518_06682 Z518_06682 Z518_08790 Z518_08790 Z518_08729 Z518_08729 Z518_09398 Z518_09398 Z518_09303 Z518_09303
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Z518_10198annotation not available (544 aa)
Z518_09787annotation not available (693 aa)
Z518_09657annotation not available (533 aa)
YTM1Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (460 aa)
Z518_10481annotation not available (261 aa)
Z518_10814annotation not available (364 aa)
Z518_10759annotation not available (871 aa)
Z518_10694annotation not available (255 aa)
Z518_11084annotation not available (264 aa)
Z518_11215annotation not available (296 aa)
Z518_11414annotation not available (339 aa)
Z518_01447Adenylate kinase isoenzyme 6 homolog; Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. Has also ATPase activity. May be involved in rRNA maturation and transcription regulation. (193 aa)
Z518_01266annotation not available (436 aa)
Z518_01016annotation not available (779 aa)
Z518_0093120S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (424 aa)
Z518_00751annotation not available (888 aa)
Z518_00550annotation not available (1081 aa)
SPB1AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (825 aa)
Z518_03021annotation not available (765 aa)
Z518_02921annotation not available (368 aa)
Z518_02851annotation not available (258 aa)
Z518_02776annotation not available (639 aa)
Z518_02680annotation not available (1848 aa)
Z518_02504annotation not available (804 aa)
Z518_02499Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (534 aa)
Z518_02163Belongs to the DEAD box helicase family. (796 aa)
Z518_01828annotation not available (536 aa)
Z518_05057annotation not available (66 aa)
Z518_04195annotation not available (1990 aa)
Z518_03808Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family. (685 aa)
Z518_06422annotation not available (691 aa)
Z518_0641740S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (202 aa)
Z518_06227annotation not available (393 aa)
Z518_05972annotation not available (650 aa)
Z518_05555annotation not available (596 aa)
Z518_05203Ribonuclease P protein subunit. (241 aa)
Z518_05197Belongs to the DEAD box helicase family. (801 aa)
Z518_05172annotation not available (553 aa)
Z518_07358annotation not available (532 aa)
Z518_07338annotation not available (291 aa)
Z518_07223annotation not available (2585 aa)
Z518_01468Protein MAK16; Belongs to the MAK16 family. (329 aa)
Z518_06967annotation not available (394 aa)
Z518_06857annotation not available (213 aa)
Z518_066865'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (1043 aa)
Z518_00977annotation not available (508 aa)
Z518_00932annotation not available (64 aa)
Z518_06485U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (280 aa)
Z518_007275'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins. (1394 aa)
Z518_08773annotation not available (1017 aa)
Z518_08371Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (659 aa)
Z518_08179annotation not available (405 aa)
Z518_03378annotation not available (205 aa)
Z518_09577annotation not available (970 aa)
Z518_03227annotation not available (1792 aa)
Z518_02982annotation not available (1184 aa)
Z518_02972annotation not available (103 aa)
Z518_09080annotation not available (188 aa)
Z518_01688annotation not available (295 aa)
Z518_01486annotation not available (330 aa)
Z518_02395annotation not available (135 aa)
TSR3Ribosome biogenesis protein TSR3; Ribosome biogenesis protein required for processing 35S pre- rRNA at site D; Belongs to the TSR3 family. (392 aa)
Z518_02330annotation not available (416 aa)
Z518_02274annotation not available (403 aa)
Z518_02154annotation not available (275 aa)
Z518_09975annotation not available (575 aa)
Z518_09930RNA helicase. (649 aa)
Z518_04982annotation not available (995 aa)
Z518_00965annotation not available (1226 aa)
Z518_04802H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (233 aa)
Z518_10519annotation not available (320 aa)
Z518_00207annotation not available (657 aa)
Z518_10702Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (126 aa)
Z518_03728annotation not available (246 aa)
Z518_03200ATP-dependent RNA helicase DBP10. (932 aa)
Z518_03165annotation not available (302 aa)
Z518_03085annotation not available (386 aa)
Z518_03080annotation not available (313 aa)
Z518_02965annotation not available (283 aa)
Z518_02835annotation not available (315 aa)
Z518_06288Belongs to the DEAD box helicase family. (399 aa)
Z518_06178annotation not available (1105 aa)
Z518_02022annotation not available (763 aa)
Z518_05546U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (737 aa)
Z518_05461annotation not available (257 aa)
Z518_01897annotation not available (527 aa)
Z518_0535140S ribosomal protein S21; Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability. (88 aa)
Z518_05314annotation not available (325 aa)
Z518_04795annotation not available (391 aa)
Z518_07755annotation not available (661 aa)
Z518_07644U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; Belongs to the methyltransferase superfamily. METTL16/RlmF family. (490 aa)
Z518_07549annotation not available (215 aa)
Z518_0443540S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (203 aa)
Z518_07474rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (384 aa)
Z518_07384annotation not available (727 aa)
Z518_07359annotation not available (368 aa)
Z518_04123annotation not available (315 aa)
Z518_03993Belongs to the DEAD box helicase family. (736 aa)
Z518_03958annotation not available (948 aa)
Z518_03883annotation not available (652 aa)
Z518_06361annotation not available (385 aa)
Z518_06336annotation not available (1291 aa)
Z518_08869annotation not available (257 aa)
Z518_08849annotation not available (385 aa)
Z518_08799Belongs to the DEAD box helicase family. (525 aa)
Z518_06181annotation not available (810 aa)
Z518_08759Belongs to the universal ribosomal protein uS9 family. (143 aa)
Z518_08643annotation not available (346 aa)
Z518_05976annotation not available (280 aa)
Z518_05876annotation not available (260 aa)
Z518_05825annotation not available (245 aa)
Z518_05770annotation not available (239 aa)
Z518_05690annotation not available (532 aa)
Z518_08150annotation not available (514 aa)
Z518_08060annotation not available (262 aa)
Z518_07895annotation not available (298 aa)
Z518_09503annotation not available (902 aa)
Z518_05156Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (429 aa)
Z518_07602annotation not available (360 aa)
Z518_08961annotation not available (547 aa)
Z518_07227annotation not available (553 aa)
Z518_10052annotation not available (352 aa)
Z518_07127annotation not available (613 aa)
Z518_09846annotation not available (604 aa)
Z518_06771annotation not available (643 aa)
Z518_06679annotation not available (401 aa)
Z518_10510annotation not available (273 aa)
Z518_08757Belongs to the universal ribosomal protein uS11 family. (151 aa)
Z518_10843annotation not available (335 aa)
Z518_11403RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (473 aa)
Z518_09476rRNA-processing protein; Involved in nucleolar integrity and required for processing of the pre-rRNA for the 60S ribosome subunit. Belongs to the CGR1 family. (131 aa)
Z518_10080annotation not available (783 aa)
Z518_10065annotation not available (447 aa)
Z518_09764annotation not available (628 aa)
Z518_10971annotation not available (686 aa)
Z518_10856annotation not available (183 aa)
Z518_01455annotation not available (500 aa)
Z518_0118925S rRNA adenine-N(1) methyltransferase; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of an adenine present in helix 65 in 25S rRNA; Belongs to the BMT2 family. (417 aa)
Z518_01024annotation not available (110 aa)
Z518_00678Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (717 aa)
Z518_00236annotation not available (279 aa)
Z518_00216annotation not available (369 aa)
Z518_03284annotation not available (732 aa)
Z518_03164annotation not available (240 aa)
Z518_03074Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Belongs to the eukaryotic/archaeal RNase P protein component 2 family. (208 aa)
Z518_02281annotation not available (821 aa)
Z518_02036annotation not available (687 aa)
Z518_05040Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (238 aa)
Z518_04894annotation not available (591 aa)
NOP7Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (699 aa)
Z518_03690annotation not available (229 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (119 aa)
Z518_06115annotation not available (560 aa)
Z518_05664annotation not available (732 aa)
Z518_05553annotation not available (451 aa)
Z518_05513Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (217 aa)
Z518_05503annotation not available (130 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
Z518_05135annotation not available (900 aa)
Z518_07692annotation not available (261 aa)
Z518_06985annotation not available (443 aa)
Z518_06930Belongs to the DEAD box helicase family. (474 aa)
Z518_06508annotation not available (602 aa)
Z518_08585Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family. (512 aa)
Z518_08142KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (340 aa)
Z518_07852Belongs to the DEAD box helicase family. (526 aa)
Z518_09389Belongs to the universal ribosomal protein uS15 family. (151 aa)
Z518_09304annotation not available (507 aa)
NAT10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1104 aa)
Z518_09843annotation not available (584 aa)
Z518_09743annotation not available (438 aa)
Z518_10668annotation not available (50 aa)
Z518_10457annotation not available (151 aa)
Z518_10442annotation not available (935 aa)
Z518_10285annotation not available (227 aa)
Z518_10265Belongs to the RNR ribonuclease family. (1005 aa)
Z518_11035annotation not available (605 aa)
Z518_11415annotation not available (349 aa)
Z518_01625annotation not available (277 aa)
Z518_01459annotation not available (225 aa)
Z518_01193U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (743 aa)
Z518_01173annotation not available (380 aa)
Z518_00858annotation not available (421 aa)
Z518_00180annotation not available (414 aa)
Z518_02421annotation not available (873 aa)
Z518_02401annotation not available (974 aa)
Z518_02025annotation not available (635 aa)
Z518_01810U3 small nucleolar RNA-associated protein 22. (1149 aa)
Z518_05054annotation not available (238 aa)
Z518_04908annotation not available (82 aa)
Z518_04898annotation not available (976 aa)
ERB1Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (781 aa)
Z518_04483annotation not available (1054 aa)
Z518_04358annotation not available (1180 aa)
Z518_04076Belongs to the DEAD box helicase family. (513 aa)
Z518_03870annotation not available (108 aa)
Z518_03845Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (4845 aa)
Z518_06409annotation not available (293 aa)
Z518_06314annotation not available (357 aa)
Z518_06294annotation not available (271 aa)
Z518_06174annotation not available (345 aa)
Z518_05487annotation not available (1074 aa)
Z518_05270RNA helicase. (836 aa)
Z518_05144annotation not available (311 aa)
Z518_07650annotation not available (903 aa)
Z518_07290annotation not available (429 aa)
Z518_07125annotation not available (608 aa)
Z518_07065annotation not available (299 aa)
Z518_06779annotation not available (450 aa)
Z518_06682RNA helicase. (634 aa)
Z518_08790annotation not available (270 aa)
Z518_08729annotation not available (522 aa)
Z518_09398U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
Z518_09303annotation not available (728 aa)
Your Current Organism:
Rhinocladiella mackenziei
NCBI taxonomy Id: 1442369
Other names: R. mackenziei CBS 650.93, Rhinocladiella mackenziei CBS 650.93
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